MALDI-TOF mass spectrometry - A versatile tool for high-performance DNA analysis

被引:146
作者
Jurinke, C [1 ]
Oeth, P [1 ]
van den Boom, D [1 ]
机构
[1] Sequenom Inc, San Diego, CA 92121 USA
关键词
MALDI-TOF; SNP analysis; genotyping; quantitative MALDI-TOF; gene-expression analysis; resequencing; SNP discovery; DNA pooling;
D O I
10.1385/MB:26:2:147
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Matrix-assisted laser desorption/ionization (MALDI) time-of-flight (TOF) mass spectrometry (MS) has developed during the past decade into a versatile tool for biopolymer analysis. The aim of this review is to summarize this development and outline the applications, which have been enabled for routine use in the field of nucleic acid analysis. These include the analysis of mutations, the resequencing of amplicons with a known reference sequence, and the quantitative analysis of gene expression and allelic frequencies in complex DNA mixtures.
引用
收藏
页码:147 / 163
页数:17
相关论文
共 84 条
  • [1] Quantitative mutant analysis of viral quasispecies by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    Amexis, G
    Oeth, P
    Abel, K
    Ivshina, A
    Pelloquin, F
    Cantor, CR
    Brau, A
    Chumakov, K
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (21) : 12097 - 12102
  • [2] Association testing by DNA pooling: An effective initial screen
    Bansal, A
    van den Boom, D
    Kammerer, S
    Honisch, C
    Adam, G
    Cantor, CR
    Kleyn, P
    Braun, A
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (26) : 16871 - 16874
  • [3] Barratt BJ, 2002, ANN HUM GENET, V66, P393, DOI [10.1046/j.1469-1809.2002.00125.x, 10.1017/S0003480002001252]
  • [4] Multiplexed gene expression analysis using the invader RNA assay with MALDI-TOF mass spectrometry detection
    Berggren, WT
    Takova, T
    Olson, MC
    Eis, PS
    Kwiatkowski, RW
    Smith, LM
    [J]. ANALYTICAL CHEMISTRY, 2002, 74 (08) : 1745 - 1750
  • [5] Infrared MALDI mass spectrometry of large nucleic acids
    Berkenkamp, S
    Kirpekar, F
    Hillenkamp, F
    [J]. SCIENCE, 1998, 281 (5374) : 260 - 262
  • [6] Bornsen KO, 1997, RAPID COMMUN MASS SP, V11, P603, DOI 10.1002/(SICI)1097-0231(199704)11:6<603::AID-RCM879>3.0.CO
  • [7] 2-U
  • [8] Braun A, 1997, CLIN CHEM, V43, P1151
  • [9] Improved analysis of microsatellites using mass spectrometry
    Braun, A
    Little, DP
    Reuter, D
    MullerMysok, B
    Koster, H
    [J]. GENOMICS, 1997, 46 (01) : 18 - 23
  • [10] Practical quantitative biomedical applications of MALDI-TOF mass spectrometry
    Bucknall, M
    Fung, KYC
    Duncan, MW
    [J]. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2002, 13 (09) : 1015 - 1027