Sequencing goes 454 and takes large-scale genomics into the wild

被引:90
作者
Ellegren, Hans [1 ]
机构
[1] Uppsala Univ, Dept Evolut Biol, SE-75236 Uppsala, Sweden
关键词
EST sequencing; Glanville fritillary butterfly; ultrahigh throughput;
D O I
10.1111/j.1365-294X.2008.03699.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Sometimes, science takes a big leap forward. This is often due to new technology that allows the study of questions previously difficult or even impossible to address. An example of this is provided in this issue (Vera et al. 2008) by the first large-scale attempt toward genome sequencing of an ecologically important model, based on the new '454-sequencing technology'. Using this new technology, the protein-coding sequences of the Glanville fritillary butterfly genome have now been largely characterized.
引用
收藏
页码:1629 / 1631
页数:3
相关论文
共 14 条
[1]   Solexa Ltd [J].
Bennett, S .
PHARMACOGENOMICS, 2004, 5 (04) :433-438
[2]   Whole-genome re-sequencing [J].
Bentley, David R. .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2006, 16 (06) :545-552
[3]   The molecular ecologist's guide to expressed sequence tags [J].
Bouck, Amy ;
Vision, Todd .
MOLECULAR ECOLOGY, 2007, 16 (05) :907-924
[4]  
EHRLICH PR, 2004, WING CHECKERPOTS MOD
[5]   A candidate locus for variation in dispersal rate in a butterfly metapopulation [J].
Haag, CR ;
Saastamoinen, M ;
Marden, JH ;
Hanski, I .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 272 (1580) :2449-2456
[6]   Molecular-level variation affects population growth in a butterfly metapopulation [J].
Hanski, Ilkka ;
Saccheri, Ilik .
PLOS BIOLOGY, 2006, 4 (05) :719-726
[7]   Genome sequencing in microfabricated high-density picolitre reactors [J].
Margulies, M ;
Egholm, M ;
Altman, WE ;
Attiya, S ;
Bader, JS ;
Bemben, LA ;
Berka, J ;
Braverman, MS ;
Chen, YJ ;
Chen, ZT ;
Dewell, SB ;
Du, L ;
Fierro, JM ;
Gomes, XV ;
Godwin, BC ;
He, W ;
Helgesen, S ;
Ho, CH ;
Irzyk, GP ;
Jando, SC ;
Alenquer, MLI ;
Jarvie, TP ;
Jirage, KB ;
Kim, JB ;
Knight, JR ;
Lanza, JR ;
Leamon, JH ;
Lefkowitz, SM ;
Lei, M ;
Li, J ;
Lohman, KL ;
Lu, H ;
Makhijani, VB ;
McDade, KE ;
McKenna, MP ;
Myers, EW ;
Nickerson, E ;
Nobile, JR ;
Plant, R ;
Puc, BP ;
Ronan, MT ;
Roth, GT ;
Sarkis, GJ ;
Simons, JF ;
Simpson, JW ;
Srinivasan, M ;
Tartaro, KR ;
Tomasz, A ;
Vogt, KA ;
Volkmer, GA .
NATURE, 2005, 437 (7057) :376-380
[8]   NEW METHOD FOR SEQUENCING DNA [J].
MAXAM, AM ;
GILBERT, W .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1977, 74 (02) :560-564
[9]   A sequencing method based on real-time pyrophosphate [J].
Ronaghi, M ;
Uhlén, M ;
Nyrén, P .
SCIENCE, 1998, 281 (5375) :363-+
[10]   Inbreeding and extinction in a butterfly metapopulation [J].
Saccheri, I ;
Kuussaari, M ;
Kankare, M ;
Vikman, P ;
Fortelius, W ;
Hanski, I .
NATURE, 1998, 392 (6675) :491-494