The genome of the mesopolyploid crop species Brassica rapa

被引：1595

作者：

Wang, Xiaowu ^{[1
]}

Wang, Hanzhong ^{[2
]}

Wang, Jun ^{[3
,4
]}

Sun, Rifei ^{[1
]}

Wu, Jian ^{[1
]}

Liu, Shengyi ^{[2
]}

Bai, Yinqi ^{[3
]}

Mun, Jeong-Hwan ^{[5
]}

Bancroft, Ian ^{[6
]}

Cheng, Feng

Huang, Sanwen ^{[1
]}

Li, Xixiang ^{[1
]}

Hua, Wei ^{[2
]}

Wang, Junyi ^{[3
]}

Wang, Xiyin ^{[7
,8
,9
]}

Freeling, Michael ^{[10
]}

Pires, J. Chris ^{[11
]}

Paterson, Andrew H. ^{[9
]}

Chalhoub, Boulos ^{[12
]}

Wang, Bo ^{[3
]}

Hayward, Alice ^{[13
,14
]}

Sharpe, Andrew G. ^{[15
]}

Park, Beom-Seok ^{[5
]}

Weisshaar, Bernd ^{[16
]}

Liu, Binghang ^{[3
]}

Li, Bo ^{[3
]}

Liu, Bo ^{[1
]}

Tong, Chaobo ^{[2
]}

Song, Chi ^{[3
]}

Duran, Christopher ^{[13
,17
]}

Peng, Chunfang ^{[3
]}

Geng, Chunyu ^{[3
]}

Koh, Chushin ^{[15
]}

Lin, Chuyu ^{[3
]}

Edwards, David ^{[13
,17
]}

Mu, Desheng ^{[3
]}

Shen, Di ^{[1
]}

Soumpourou, Eleni ^{[6
]}

Li, Fei ^{[1
]}

Fraser, Fiona ^{[6
]}

Conant, Gavin ^{[18
]}

Lassalle, Gilles ^{[19
]}

King, Graham J. ^{[20
]}

Bonnema, Guusje ^{[21
]}

Tang, Haibao

Wang, Haiping ^{[1
]}

Belcram, Harry ^{[12
]}

Zhou, Heling ^{[3
]}

Hirakawa, Hideki ^{[22
]}

Abe, Hiroshi ^{[23
]}

机构：

[1] Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100193, Peoples R China

[2] Chinese Acad Agr Sci, Oil Crops Res Inst, Wuhan, Hubei, Peoples R China

[3] BGI Shenzhen, Shenzhen, Peoples R China

[4] Univ Copenhagen, Dept Biol, Copenhagen, Denmark

[5] Natl Acad Agr Sci, Dept Agr Biotechnol, Rural Dev Adm, Suwon, South Korea

[6] John Innes Ctr, Norwich, Norfolk, England

[7] Hebei United Univ, Sch Life Sci, Ctr Genom & Computat Biol, Tangshan, Hebei, Peoples R China

[8] Hebei United Univ, Sch Sci, Tangshan, Hebei, Peoples R China

[9] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA

[10] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA

[11] Univ Missouri, Div Biol Sci, Bond Life Sci Ctr, Columbia, MO 65211 USA

[12] Univ Evry Val dEssonne, Inland NW Res Alliance Ctr Natl Rech Sci, Org & Evolut Plant Genomes, Unite Rech Genom Vegetale,Unite Mixte Rech 1165, Evry, France

[13] Univ Queensland, Sch Agr & Food Sci, Brisbane, Qld, Australia

[14] Australian Res Council Ctr Excellence Integrat Le, Brisbane, Qld, Australia

[15] Natl Res Council Plant Biotechnol Inst, Saskatoon, SK, Canada

[16] Univ Bielefeld, Ctr Biotechnol, Bielefeld, Germany

[17] Australian Ctr Plant Funct Genom, Brisbane, Qld, Australia

[18] Univ Missouri, Div Anim Sci, Columbia, MO USA

[19] Univ Rennes 1, Unite Mixte Rech Ameliorat Plantes & Biotechnol V, Le Rheu, France

[20] Rothamsted Res, Ctr Crop Genet Improvement, Harpenden, Herts, England

[21] Wageningen Univ, Wageningen, Netherlands

[22] Kazusa DNA Res Inst, Chiba, Japan

[23] RIKEN BioResource Ctr, Expt Plant Div, Tsukuba, Ibaraki, Japan

[24] Agr & Agri Food Canada, Saskatoon, SK, Canada

[25] Huazhong Agr Univ, Natl Key Lab Crop Genet Improvement, Wuhan, Peoples R China

[26] Genoscope, Inst Genom Commissariat Energie Atom, Evry, France

[27] Chungnam Natl Univ, Dept Hort, Mol Genet & Genom Lab, Taejon, South Korea

[28] Natl Inst Vegetable & Tea Sci, Tsu, Mie, Japan

[29] Res Inst Biol Sci, Okayama, Japan

来源：

NATURE GENETICS | 2011年 / 43卷 / 10期

基金：

英国生物技术与生命科学研究理事会; 中国国家自然科学基金; 澳大利亚研究理事会; 美国国家科学基金会;

关键词：

DUPLICATED GENES; ARABIDOPSIS; EVOLUTION; SEQUENCE; DIVERSIFICATION; REPRESSOR; ALIGNMENT; GENETICS; OLERACEA; ANCIENT;

D O I：

10.1038/ng.919

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

We report the annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage. We modeled 41,174 protein coding genes in the B. rapa genome, which has undergone genome triplication. We used Arabidopsis thaliana as an outgroup for investigating the consequences of genome triplication, such as structural and functional evolution. The extent of gene loss (fractionation) among triplicated genome segments varies, with one of the three copies consistently retaining a disproportionately large fraction of the genes expected to have been present in its ancestor. Variation in the number of members of gene families present in the genome may contribute to the remarkable morphological plasticity of Brassica species. The B. rapa genome sequence provides an important resource for studying the evolution of polyploid genomes and underpins the genetic improvement of Brassica oil and vegetable crops.

引用

页码：1035 / U157

页数：6

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