Minimum Information About a Simulation Experiment (MIASE)

被引：94

作者：

Waltemath, Dagmar ^{[1
]}

Adams, Richard ^{[2
,3
]}

Beard, Daniel A. ^{[4
]}

Bergmann, Frank T. ^{[5
,6
]}

Bhalla, Upinder S. ^{[7
]}

Britten, Randall ^{[8
]}

Chelliah, Vijayalakshmi

Cooling, Michael T. ^{[8
]}

Cooper, Jonathan ^{[9
]}

Crampin, Edmund J. ^{[8
]}

Garny, Alan ^{[10
]}

Hoops, Stefan ^{[11
]}

Hucka, Michael ^{[12
]}

Hunter, Peter ^{[8
]}

Klipp, Edda ^{[13
]}

Laibe, Camille

Miller, Andrew K. ^{[8
]}

Moraru, Ion ^{[14
]}

Nickerson, David ^{[8
]}

Nielsen, Poul ^{[8
]}

Nikolski, Macha ^{[15
]}

Sahle, Sven ^{[16
]}

Sauro, Herbert M. ^{[5
]}

Schmidt, Henning ^{[17
,18
]}

Snoep, Jacky L. ^{[19
]}

Tolle, Dominic

Wolkenhauer, Olaf ^{[17
]}

Le Novere, Nicolas

机构：

[1] Univ Rostock, Grad Res Sch dIEM oSiRiS, Rostock, Mecklenburg Vor, Germany

[2] Univ Edinburgh, Ctr Syst Biol Edinburgh, Edinburgh, Midlothian, Scotland

[3] Univ Edinburgh, Sch Informat, Informat Life Sci Inst, Edinburgh, Midlothian, Scotland

[4] Med Coll Wisconsin, Dept Physiol, Biotechnol & Bioengn Ctr, Milwaukee, WI 53226 USA

[5] Univ Washington, Dept Bioengn, Seattle, WA 98195 USA

[6] Keck Grad Inst, Claremont, CA USA

[7] Tata Inst Fundamental Res, Natl Ctr Biol Sci, Bangalore, Karnataka, India

[8] Univ Auckland, Auckland Bioengn Inst, Auckland 1, New Zealand

[9] Univ Oxford, Comp Lab, Oxford OX1 3QD, England

[10] Univ Oxford, Dept Physiol Anat & Genet, Cardiac Electrophysiol Grp, Oxford OX1 3QD, England

[11] Virginia Polytech Inst & State Univ, Virginia Bioinformat Inst, Blacksburgh, VA USA

[12] CALTECH, Pasadena, CA 91125 USA

[13] Humboldt Univ, Berlin, Germany

[14] Univ Connecticut, Ctr Hlth, Dept Cell Biol, Farmington, CT USA

[15] Univ Bordeaux 1, Lab Bordelais Rech Informat, Bordeaux, France

[16] Univ Heidelberg, BIOQUANT, Heidelberg, Germany

[17] Univ Rostock, Syst Biol & Bioinformat Grp, Rostock, Mecklenburg Vor, Germany

[18] Novartis Pharma AG, Basel, Switzerland

[19] Univ Stellenbosch, Dept Biochem, Matieland, South Africa

来源：

PLOS COMPUTATIONAL BIOLOGY | 2011年 / 7卷 / 04期

基金：

英国生物技术与生命科学研究理事会;

关键词：

SYSTEMS BIOLOGY; GUIDELINES; MODELS;

D O I：

10.1371/journal.pcbi.1001122

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

[No abstract available]

引用

页数：4

共 14 条

[1]

[Anonymous], 2005, Nature, V435, P1

[2] Systems biology as a foundation for genome-scale synthetic biology [J].

Barrett, Christian L. ;

Kim, Tae Yong ;

Kim, Hyun Uk ;

Palsson, Bernhard O. ;

Lee, Sang Yup .

CURRENT OPINION IN BIOTECHNOLOGY, 2006, 17 (05) :488-492

[3]

Cellier F. E., 1991, CONTINUOUS SYSTEM MO

[4]

Fall CP, 2002, MATH MED BIOL, V20, P131

[5] Executable cell biology [J].

Fisher, Jasmin ;

Henzinger, Thomas A. .

NATURE BIOTECHNOLOGY, 2007, 25 (11) :1239-1249

[6] CONSTRUCTION OF BIOCHEMICAL COMPUTER MODELS [J].

GARFINKEL, D .

FEBS LETTERS, 1969, S 2 :S9-+

[7] A strategy for integrative computational physiology [J].

Hunter, P ;

Nielsen, P .

PHYSIOLOGY, 2005, 20 :316-325

[8] Systems biology standards - the community speaks [J].

Klipp, Edda ;

Liebermeister, Wolfram ;

Helbig, Anselm ;

Kowald, Axel ;

Schaber, Joerg .

NATURE BIOTECHNOLOGY, 2007, 25 (04) :390-391

[9]

Köhn D, 2008, LECT N BIOINFORMAT, V5307, P176, DOI 10.1007/978-3-540-88562-7_15

[10] Minimum information requested in the annotation of biochemical models (MIRIAM) [J].

Le Novère, N ;

Finney, A ;

Hucka, M ;

Bhalla, US ;

Campagne, F ;

Collado-Vides, J ;

Crampin, EJ ;

Halstead, M ;

Klipp, E ;

Mendes, P ;

Nielsen, P ;

Sauro, H ;

Shapiro, B ;

Snoep, JL ;

Spence, HD ;

Wanner, BL .

NATURE BIOTECHNOLOGY, 2005, 23 (12) :1509-1515

← 1 2 →