MineBlast:: a literature presentation service supporting protein annotation by data mining of BLAST results

被引：12

作者：

Dieterich, G ^{[1
]}

Kärst, U ^{[1
]}

Wehland, J ^{[1
]}

Jänsch, L ^{[1
]}

机构：

[1] German Res Ctr Biotechnol GBF, Div Cell Biol, D-38124 Braunschweig, Germany

来源：

BIOINFORMATICS | 2005年 / 21卷 / 16期

关键词：

D O I：

10.1093/bioinformatics/bti528

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

MineBlast is a web service for literature search and presentation based on data-mining results received from UniProt. Users can submit a simple list of protein sequences via a webbased interface. MineBlast performs a BLASTP search in UniProt to identify names and synonyms based on homologous proteins and subsequently queries PubMed, using combined search terms in order to find and present relevant literature.

引用

页码：3450 / 3451

页数：2

共 12 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[2] The universal protein resource (UniProt) [J].

Bairoch, A ;

Apweiler, R ;

Wu, CH ;

Barker, WC ;

Boeckmann, B ;

Ferro, S ;

Gasteiger, E ;

Huang, HZ ;

Lopez, R ;

Magrane, M ;

Martin, MJ ;

Natale, DA ;

O'Donovan, C ;

Redaschi, N ;

Yeh, LSL .

NUCLEIC ACIDS RESEARCH, 2005, 33 :D154-D159

[3] PubMatrix: a tool for multiplex literature mining [J].

Becker, KG ;

Hosack, DA ;

Dennis, G ;

Lempicki, RA ;

Bright, TJ ;

Cheadle, C ;

Engel, J .

BMC BIOINFORMATICS, 2003, 4 (1)

[4]

Glaser P, 2001, SCIENCE, V294, P849

[5] A literature network of human genes for high-throughput analysis of gene expression [J].

Jenssen, TK ;

Lægreid, A ;

Komorowski, J ;

Hovig, E .

NATURE GENETICS, 2001, 28 (01) :21-+

[6] NLProt: extracting protein names and sequences from papers [J].

Mika, S ;

Rost, B .

NUCLEIC ACIDS RESEARCH, 2004, 32 :W634-W637

[7] InterPro, progress and status in 2005 [J].

Mulder, NJ ;

Apweiler, R ;

Attwood, TK ;

Bairoch, A ;

Bateman, A ;

Binns, D ;

Bradley, P ;

Bork, P ;

Bucher, P ;

Cerutti, L ;

Copley, R ;

Courcelle, E ;

Das, U ;

Durbin, R ;

Fleischmann, W ;

Gough, J ;

Haft, D ;

Harte, N ;

Hulo, N ;

Kahn, D ;

Kanapin, A ;

Krestyaninova, M ;

Lonsdale, D ;

Lopez, R ;

Letunic, I ;

Madera, M ;

Maslen, J ;

McDowall, J ;

Mitchell, A ;

Nikolskaya, AN ;

Orchard, S ;

Pagni, M ;

Pointing, CP ;

Quevillon, E ;

Selengut, J ;

Sigrist, CJA ;

Silventoinen, V ;

Studholme, DJ ;

Vaughan, R ;

Wu, CH .

NUCLEIC ACIDS RESEARCH, 2005, 33 :D201-D205

[8] Update on XplorMed:: a web server for exploring scientific literature [J].

Perez-Iratxeta, C ;

Pérez, AJ ;

Bork, P ;

Andrade, MA .

NUCLEIC ACIDS RESEARCH, 2003, 31 (13) :3866-3868

[9]

Putnam N C, 1998, Clin Excell Nurse Pract, V2, P314

[10] The bioperl toolkit:: Perl modules for the life sciences [J].

Stajich, JE ;

Block, D ;

Boulez, K ;

Brenner, SE ;

Chervitz, SA ;

Dagdigian, C ;

Fuellen, G ;

Gilbert, JGR ;

Korf, I ;

Lapp, H ;

Lehväslaiho, H ;

Matsalla, C ;

Mungall, CJ ;

Osborne, BI ;

Pocock, MR ;

Schattner, P ;

Senger, M ;

Stein, LD ;

Stupka, E ;

Wilkinson, MD ;

Birney, E .

GENOME RESEARCH, 2002, 12 (10) :1611-1618

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