Application of nonlinear and local modeling methods for 3D QSAR study of class I antiarrhythmics

被引:16
作者
Borosy, AP
Keseru, K
Mátyus, P
机构
[1] Inst Drug Res Ltd, H-1325 Budapest, Hungary
[2] Semmelweis Univ, Dept Organ Chem, H-1092 Budapest, Hungary
关键词
D O I
10.1016/S0169-7439(00)00109-X
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Locally weighted regression and artificial neural networks were employed to find a quantitative relationship between recovery time and molecular structures for class I antiarrhythmics. Nonlinear and local models have been built between score vectors of columns of Comparative Molecular Field Analysis (CoMFA) as independent variables and recovery time values as dependent variables. Other method by applying cheaply computed descriptors invariant to roto-translation with artificial neural networks were also used. Predictive ability of the methods was tested by a separate set of compounds, and the pel performance of both procedures proved to be acceptable, and comparable to CoMFA. This study clearly demonstrates the need and ability of nonlinear algorithms in building of 3D QSARs. The methods presented here do not assume any particular functional form for developing quantitative models between molecular descriptors and biological activity. (C) 2000 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:107 / 122
页数:16
相关论文
共 73 条
[1]   X-RAY CRYSTAL-STRUCTURE, PARTITIONING BEHAVIOR, AND MOLECULAR MODELING STUDY OF PIRACETAM-TYPE NOOTROPICS - INSIGHTS INTO THE PHARMACOPHORE [J].
ALTOMARE, C ;
CELLAMARE, S ;
CAROTTI, A ;
CASINI, G ;
FERAPPI, M ;
GAVUZZO, E ;
MAZZA, F ;
CARRUPT, PA ;
GAILLARD, P ;
TESTA, B .
JOURNAL OF MEDICINAL CHEMISTRY, 1995, 38 (01) :170-179
[2]   GENERATING OPTIMAL LINEAR PLS ESTIMATIONS (GOLPE) - AN ADVANCED CHEMOMETRIC TOOL FOR HANDLING 3D-QSAR PROBLEMS [J].
BARONI, M ;
COSTANTINO, G ;
CRUCIANI, G ;
RIGANELLI, D ;
VALIGI, R ;
CLEMENTI, S .
QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIPS, 1993, 12 (01) :9-20
[3]   MOLECULAR SIMILARITY AND ESTIMATION OF MOLECULAR-PROPERTIES [J].
BASAK, SC ;
GRUNWALD, GD .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1995, 35 (03) :366-372
[4]   3D QSAR study of class I antiarrhythmics [J].
Borosy, AP ;
Keseru, K ;
Pénzes, I ;
Mátyus, P .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2000, 503 (1-2) :113-129
[5]   Quantitative composition-property modelling of rubber mixtures by utilising artificial neural networks [J].
Borosy, AP .
CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, 1999, 47 (02) :227-238
[6]   MS-WHIM, new 3D theoretical descriptors derived from molecular surface properties: A comparative 3D QSAR study in a series of steroids [J].
Bravi, G ;
Gancia, E ;
Mascagni, P ;
Pegna, M ;
Todeschini, R ;
Zaliani, A .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1997, 11 (01) :79-92
[7]  
BROTO P, 1984, EUR J MED CHEM, V19, P66
[8]  
BROTO P, 1984, EUR J MED CHEM, V19, P71
[9]  
Brown SD, 1996, ANAL CHEM, V68, pR21, DOI 10.1021/a1960005x
[10]   QSAR ANALYSES OF THE SUBSTITUTED INDANONE AND BENZYLPIPERIDINE RINGS OF A SERIES OF INDANONE BENZYLPIPERIDINE INHIBITORS OF ACETYLCHOLINESTERASE [J].
CARDOZO, MG ;
IIMURA, Y ;
SUGIMOTO, H ;
YAMANISHI, Y ;
HOPFINGER, AJ .
JOURNAL OF MEDICINAL CHEMISTRY, 1992, 35 (03) :584-589