Free software tools for atlas-based volumetric neuroimage analysis

被引：5

作者：

Bazin, PL ^{[1
]}

Pham, DL ^{[1
]}

Gandler, W ^{[1
]}

McAuliffe, M ^{[1
]}

机构：

[1] Johns Hopkins Univ, Lab Med Image Comp, Baltimore, MD 21218 USA

来源：

MEDICAL IMAGING 2005: IMAGE PROCESSING, PT 1-3 | 2005年 / 5747卷

关键词：

volumetric image analysis; segmentation; Talairach atlas; Talairach alignment; AC-PC alignment;

D O I：

10.1117/12.595602

中图分类号：

TB8 [摄影技术];

学科分类号：

0804 [仪器科学与技术];

摘要：

We describe new and freely available software tools for measuring volumes in subregions of the brain. The method is fast, flexible, and employs well-studied techniques based on the Talairach-Tournoux atlas. The software tools are released as plug-ins for MIPAV, a freely available and user-friendly image analysis software package developed by the National Institutes of Health. Our software tools include a dioital Talairach atlas that consists of labels for 148 different substructures of the brain at various scales.

引用

页码：1824 / 1833

页数：10

共 23 条

[1]

*AFNI, AN FUNCT NEUR

[2]

Automatic atlas-based volume estimation of human brain regions from MR images [J].

Andreasen, NC ;

Rajarethinam, R ;

Cizadlo, T ;

Arndt, S ;

Swayze, VW ;

Flashman, LA ;

OLeary, DS ;

Ehrhardt, JC ;

Yuh, WTC .

JOURNAL OF COMPUTER ASSISTED TOMOGRAPHY, 1996, 20 (01) :98-106

[3]

Volumetric transformation of brain anatomy [J].

Christensen, GE ;

Joshi, SC ;

Miller, MI .

IEEE TRANSACTIONS ON MEDICAL IMAGING, 1997, 16 (06) :864-877

[4]

Zen and the art of medical image registration: correspondence, homology, and quality [J].

Crum, WR ;

Griffin, LD ;

Hill, DLG ;

Hawkes, DJ .

NEUROIMAGE, 2003, 20 (03) :1425-1437

[5]

Whole brain segmentation: Automated labeling of neuroanatomical structures in the human brain [J].

Fischl, B ;

Salat, DH ;

Busa, E ;

Albert, M ;

Dieterich, M ;

Haselgrove, C ;

van der Kouwe, A ;

Killiany, R ;

Kennedy, D ;

Klaveness, S ;

Montillo, A ;

Makris, N ;

Rosen, B ;

Dale, AM .

NEURON, 2002, 33 (03) :341-355

[6]

An image-processing system for qualitative and quantitative volumetric analysis of brain images [J].

Goldszal, AF ;

Davatzikos, C ;

Pham, DL ;

Yan, MXH ;

Bryan, RN ;

Resnick, SM .

JOURNAL OF COMPUTER ASSISTED TOMOGRAPHY, 1998, 22 (05) :827-837

[7]

CRUISE: Cortical reconstruction using implicit surface evolution [J].

Han, X ;

Pham, DL ;

Tosun, D ;

Rettmann, ME ;

Xu, CY ;

Prince, JL .

NEUROIMAGE, 2004, 23 (03) :997-1012

[8]

*ICBM, SINGL SUBJ MRI AN TE

[9]

Lancaster JL., 1997, NEUROIMAGE, V5

[10]

Maintz J B, 1998, Med Image Anal, V2, P1, DOI 10.1016/S1361-8415(01)80026-8

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