The aMAZE LightBench: a web interface to a relational database of cellular processes

被引:40
作者
Lemer, C
Antezana, E
Couche, F
Fays, F
Santolaria, X
Janky, R
Deville, Y
Richelle, J
Wodak, SJ
机构
[1] Free Univ Brussels, SCMBB, aMAZE Project, B-1050 Brussels, Belgium
[2] Univ Catholique Louvain, Dept Ingn Informat, B-1348 Louvain, Belgium
关键词
D O I
10.1093/nar/gkh139
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The aMAZE LightBench (http://www.amaze.ulb. ac.be/) is a web interface to the aMAZE relational database, which contains information on gene expression, catalysed chemical reactions, regulatory interactions, protein assembly, as well as metabolic and signal transduction pathways. It allows the user to browse the information in an intuitive way, which also reflects the underlying data model. Moreover links are provided to literature references, and whenever appropriate, to external databases.
引用
收藏
页码:D443 / D448
页数:6
相关论文
共 16 条
[1]  
Bader GD, 2003, NUCLEIC ACIDS RES, V31, P248, DOI 10.1093/nar/gkg056
[2]   The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 [J].
Boeckmann, B ;
Bairoch, A ;
Apweiler, R ;
Blatter, MC ;
Estreicher, A ;
Gasteiger, E ;
Martin, MJ ;
Michoud, K ;
O'Donovan, C ;
Phan, I ;
Pilbout, S ;
Schneider, M .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :365-370
[3]   The KEGG databases at GenomeNet [J].
Kanehisa, M ;
Goto, S ;
Kawashima, S ;
Nakaya, A .
NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :42-46
[4]   The EcoCyc database [J].
Karp, PD ;
Riley, M ;
Saier, M ;
Paulsen, IT ;
Collado-Vides, J ;
Paley, SM ;
Pellegrini-Toole, A ;
Bonavides, C ;
Gama-Castro, S .
NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :56-58
[5]   TRANSPATH®:: an integrated database on signal transduction and a tool for array analysis [J].
Krull, M ;
Voss, N ;
Choi, C ;
Pistor, S ;
Potapov, A ;
Wingender, E .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :97-100
[6]   TRANSFAC®:: transcriptional regulation, from patterns to profiles [J].
Matys, V ;
Fricke, E ;
Geffers, R ;
Gössling, E ;
Haubrock, M ;
Hehl, R ;
Hornischer, K ;
Karas, D ;
Kel, AE ;
Kel-Margoulis, OV ;
Kloos, DU ;
Land, S ;
Lewicki-Potapov, B ;
Michael, H ;
Münch, R ;
Reuter, I ;
Rotert, S ;
Saxel, H ;
Scheer, M ;
Thiele, S ;
Wingender, E .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :374-378
[7]  
MENDES P, 1993, COMPUT APPL BIOSCI, V9, P563
[8]   The InterPro Database, 2003 brings increased coverage and new features [J].
Mulder, NJ ;
Apweiler, R ;
Attwood, TK ;
Bairoch, A ;
Barrell, D ;
Bateman, A ;
Binns, D ;
Biswas, M ;
Bradley, P ;
Bork, P ;
Bucher, P ;
Copley, RR ;
Courcelle, E ;
Das, U ;
Durbin, R ;
Falquet, L ;
Fleischmann, W ;
Griffiths-Jones, S ;
Haft, D ;
Harte, N ;
Hulo, N ;
Kahn, D ;
Kanapin, A ;
Krestyaninova, M ;
Lopez, R ;
Letunic, I ;
Lonsdale, D ;
Silventoinen, V ;
Orchard, SE ;
Pagni, M ;
Peyruc, D ;
Ponting, CP ;
Selengut, JD ;
Servant, F ;
Sigrist, CJA ;
Vaughan, R ;
Zdobnov, EM .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :315-318
[9]   WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction [J].
Overbeek, R ;
Larsen, N ;
Pusch, GD ;
D'Souza, M ;
Selkov, E ;
Kyrpides, N ;
Fonstein, M ;
Maltsev, N ;
Selkov, E .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :123-125
[10]   RegulonDB (version 3.2):: transcriptional regulation and operon organization in Escherichia coli K-12 [J].
Salgado, H ;
Santos-Zavaleta, A ;
Gama-Castro, S ;
Millén-Zárate, D ;
Díaz-Peredo, E ;
Sánchez-Solano, F ;
Pérez-Rueda, E ;
Bonavides-Martínez, C ;
Collado-Vides, J .
NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :72-74