共 111 条
The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin
被引:289
作者:

Dame, RT
论文数: 0 引用数: 0
h-index: 0
机构:
Vrije Univ Amsterdam, Dept Phys & Astron, Fac Sci, Amsterdam, Netherlands Vrije Univ Amsterdam, Dept Phys & Astron, Fac Sci, Amsterdam, Netherlands
机构:
[1] Vrije Univ Amsterdam, Dept Phys & Astron, Fac Sci, Amsterdam, Netherlands
关键词:
D O I:
10.1111/j.1365-2958.2005.04598.x
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
The bacterial chromosomal DNA is folded into a compact structure called nucleoid. The shape and size of this 'body' is determined by a number of factors. Major players are DNA supercoiling, macromolecular crowding and architectural proteins, associated with the nucleoid, Which are the topic of this MicroReview. Although many of these proteins were identified more than 25 years ago, the molecular mechanisms involved in the organization and compaction of DNA have only started to become clear in recent years. Many of these new insights can be attributed to the use of recently developed biophysical techniques.
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页码:858 / 870
页数:13
相关论文
共 111 条
[1]
Effects of the Escherichia coli DNA-binding protein H-NS on rRNA synthesis in vivo
[J].
Afflerbach, H
;
Schröder, O
;
Wagner, R
.
MOLECULAR MICROBIOLOGY,
1998, 28 (03)
:641-653

Afflerbach, H
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Dusseldorf, Inst Phys Biol, D-40225 Dusseldorf, Germany Univ Dusseldorf, Inst Phys Biol, D-40225 Dusseldorf, Germany

Schröder, O
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Dusseldorf, Inst Phys Biol, D-40225 Dusseldorf, Germany Univ Dusseldorf, Inst Phys Biol, D-40225 Dusseldorf, Germany

Wagner, R
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Dusseldorf, Inst Phys Biol, D-40225 Dusseldorf, Germany Univ Dusseldorf, Inst Phys Biol, D-40225 Dusseldorf, Germany
[2]
Compaction of single DNA molecules induced by binding of integration host factor (IHF)
[J].
Ali, BMJ
;
Amit, R
;
Braslavsky, I
;
Oppenheim, AB
;
Gileadi, O
;
Stavans, J
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2001, 98 (19)
:10658-10663

Ali, BMJ
论文数: 0 引用数: 0
h-index: 0
机构: Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel

Amit, R
论文数: 0 引用数: 0
h-index: 0
机构: Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel

Braslavsky, I
论文数: 0 引用数: 0
h-index: 0
机构: Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel

Oppenheim, AB
论文数: 0 引用数: 0
h-index: 0
机构: Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel

Gileadi, O
论文数: 0 引用数: 0
h-index: 0
机构: Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel

Stavans, J
论文数: 0 引用数: 0
h-index: 0
机构:
Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel
[3]
Stretching DNA and RNA to probe their interactions with proteins
[J].
Allemand, JF
;
Bensimon, D
;
Croquette, V
.
CURRENT OPINION IN STRUCTURAL BIOLOGY,
2003, 13 (03)
:266-274

Allemand, JF
论文数: 0 引用数: 0
h-index: 0
机构: Ecole Normale Super, Lab Phys Stat, F-75005 Paris, France

Bensimon, D
论文数: 0 引用数: 0
h-index: 0
机构: Ecole Normale Super, Lab Phys Stat, F-75005 Paris, France

Croquette, V
论文数: 0 引用数: 0
h-index: 0
机构: Ecole Normale Super, Lab Phys Stat, F-75005 Paris, France
[4]
A NOVEL DNA-BINDING PROTEIN WITH REGULATORY AND PROTECTIVE ROLES IN STARVED ESCHERICHIA-COLI
[J].
ALMIRON, M
;
LINK, AJ
;
FURLONG, D
;
KOLTER, R
.
GENES & DEVELOPMENT,
1992, 6 (12B)
:2646-2654

ALMIRON, M
论文数: 0 引用数: 0
h-index: 0
机构: HARVARD UNIV, SCH MED, DEPT MICROBIOL & MOLEC GENET, BOSTON, MA 02115 USA

LINK, AJ
论文数: 0 引用数: 0
h-index: 0
机构: HARVARD UNIV, SCH MED, DEPT MICROBIOL & MOLEC GENET, BOSTON, MA 02115 USA

FURLONG, D
论文数: 0 引用数: 0
h-index: 0
机构: HARVARD UNIV, SCH MED, DEPT MICROBIOL & MOLEC GENET, BOSTON, MA 02115 USA

KOLTER, R
论文数: 0 引用数: 0
h-index: 0
机构: HARVARD UNIV, SCH MED, DEPT MICROBIOL & MOLEC GENET, BOSTON, MA 02115 USA
[5]
Single molecule elasticity measurements: A biophysical approach to bacterial nucleoid organization
[J].
Amit, R
;
Oppenheim, AB
;
Stavans, J
.
BIOPHYSICAL JOURNAL,
2004, 87 (02)
:1392-1393

Amit, R
论文数: 0 引用数: 0
h-index: 0
机构: Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel

Oppenheim, AB
论文数: 0 引用数: 0
h-index: 0
机构: Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel

Stavans, J
论文数: 0 引用数: 0
h-index: 0
机构:
Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel
[6]
Increased bending rigidity of single DNA molecules by H-NS, a temperature and osmolarity sensor
[J].
Amit, R
;
Oppenheim, AB
;
Stavans, J
.
BIOPHYSICAL JOURNAL,
2003, 84 (04)
:2467-2473

Amit, R
论文数: 0 引用数: 0
h-index: 0
机构: Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel

Oppenheim, AB
论文数: 0 引用数: 0
h-index: 0
机构:
Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel

Stavans, J
论文数: 0 引用数: 0
h-index: 0
机构: Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel
[7]
Global gene expression profiling in Escherichia coli K12 -: The effects of integration host factor
[J].
Arfin, SM
;
Long, AD
;
Ito, ET
;
Tolleri, L
;
Riehle, MM
;
Paegle, ES
;
Hatfield, GW
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
2000, 275 (38)
:29672-29684

Arfin, SM
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Irvine, Coll Med, Dept Biol Chem, Irvine, CA 92697 USA Univ Calif Irvine, Coll Med, Dept Biol Chem, Irvine, CA 92697 USA

Long, AD
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Irvine, Coll Med, Dept Biol Chem, Irvine, CA 92697 USA

Ito, ET
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Irvine, Coll Med, Dept Biol Chem, Irvine, CA 92697 USA

Tolleri, L
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Irvine, Coll Med, Dept Biol Chem, Irvine, CA 92697 USA

Riehle, MM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Irvine, Coll Med, Dept Biol Chem, Irvine, CA 92697 USA

Paegle, ES
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Irvine, Coll Med, Dept Biol Chem, Irvine, CA 92697 USA

Hatfield, GW
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Irvine, Coll Med, Dept Biol Chem, Irvine, CA 92697 USA
[8]
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
[J].
Azam, TA
;
Iwata, A
;
Nishimura, A
;
Ueda, S
;
Ishihama, A
.
JOURNAL OF BACTERIOLOGY,
1999, 181 (20)
:6361-6370

Azam, TA
论文数: 0 引用数: 0
h-index: 0
机构: Natl Inst Genet, Dept Mol Genet, Shizuoka 4118540, Japan

Iwata, A
论文数: 0 引用数: 0
h-index: 0
机构: Natl Inst Genet, Dept Mol Genet, Shizuoka 4118540, Japan

Nishimura, A
论文数: 0 引用数: 0
h-index: 0
机构: Natl Inst Genet, Dept Mol Genet, Shizuoka 4118540, Japan

Ueda, S
论文数: 0 引用数: 0
h-index: 0
机构: Natl Inst Genet, Dept Mol Genet, Shizuoka 4118540, Japan

Ishihama, A
论文数: 0 引用数: 0
h-index: 0
机构:
Natl Inst Genet, Dept Mol Genet, Shizuoka 4118540, Japan Natl Inst Genet, Dept Mol Genet, Shizuoka 4118540, Japan
[9]
The bacterial histone-like protein HU specifically recognizes similar structures in all nucleic acids - DNA, RNA, and their hybrids
[J].
Balandina, A
;
Kamashev, D
;
Rouviere-Yaniv, J
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
2002, 277 (31)
:27622-27628

Balandina, A
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Biol Physicochim, CNRS, Lab Physiol Bacterienne, UPR 9073, F-75005 Paris, France Inst Biol Physicochim, CNRS, Lab Physiol Bacterienne, UPR 9073, F-75005 Paris, France

Kamashev, D
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Biol Physicochim, CNRS, Lab Physiol Bacterienne, UPR 9073, F-75005 Paris, France Inst Biol Physicochim, CNRS, Lab Physiol Bacterienne, UPR 9073, F-75005 Paris, France

Rouviere-Yaniv, J
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Biol Physicochim, CNRS, Lab Physiol Bacterienne, UPR 9073, F-75005 Paris, France Inst Biol Physicochim, CNRS, Lab Physiol Bacterienne, UPR 9073, F-75005 Paris, France
[10]
Contribution of DNA conformation and topology in right-handed DNA wrapping by the Bacillus subtilis LrpC protein
[J].
Beloin, C
;
Jeusset, J
;
Révet, B
;
Mirambeau, G
;
Le Hégarat, F
;
Le Cam, E
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
2003, 278 (07)
:5333-5342

论文数: 引用数:
h-index:
机构:

Jeusset, J
论文数: 0 引用数: 0
h-index: 0
机构: Univ Paris 11, UMR 8621, Inst Genet & Microbiol, F-91405 Orsay, France

Révet, B
论文数: 0 引用数: 0
h-index: 0
机构: Univ Paris 11, UMR 8621, Inst Genet & Microbiol, F-91405 Orsay, France

Mirambeau, G
论文数: 0 引用数: 0
h-index: 0
机构: Univ Paris 11, UMR 8621, Inst Genet & Microbiol, F-91405 Orsay, France

Le Hégarat, F
论文数: 0 引用数: 0
h-index: 0
机构: Univ Paris 11, UMR 8621, Inst Genet & Microbiol, F-91405 Orsay, France

Le Cam, E
论文数: 0 引用数: 0
h-index: 0
机构: Univ Paris 11, UMR 8621, Inst Genet & Microbiol, F-91405 Orsay, France