Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFβ

被引:213
作者
Tahirov, TH
Inoue-Bungo, T
Morii, H
Fujikawa, A
Sasaki, M
Kimura, K
Shiina, M
Sato, K
Kumasaka, T
Yamamoto, M
Ishii, S
Ogata, K
机构
[1] Yokohama City Univ, Sch Med, Kanagawa Acad Sci & Technol, Kanazawa Ku, Yokohama, Kanagawa 2360004, Japan
[2] Yokohama City Univ, Sch Med, Dept Biol Struct, Kanazawa Ku, Yokohama, Kanagawa 2360004, Japan
[3] Yokohama City Univ, Sch Med, Dept Urol, Kanazawa Ku, Yokohama, Kanagawa 2360004, Japan
[4] Yokohama City Univ, Sch Med, Dept Pathol, Kanazawa Ku, Yokohama, Kanagawa 2360004, Japan
[5] Yokohama City Univ, Sch Med, Dept Biochem, Kanazawa Ku, Yokohama, Kanagawa 2360004, Japan
[6] Natl Inst Biosci & Human Technol, Prot Folding Grp, Tsukuba, Ibaraki 3058566, Japan
[7] RIKEN, Harima Inst SPring 8, Biocrystallog Technol Div, Sayo, Hyogo 6795148, Japan
[8] RIKEN, Harima Inst SPring 8, Struct Biophys Lab, Sayo, Hyogo 6795148, Japan
[9] JST, Res Project, CREST, Tsukuba, Ibaraki 3050074, Japan
[10] RIKEN, Tsukuba Inst, Genet Mol Lab, Tsukuba, Ibaraki 3050074, Japan
关键词
D O I
10.1016/S0092-8674(01)00271-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The core binding factor (CBF) heterodimeric transcription factors comprised of AML/CBFA/PEBPSalpha/Runx and CBF beta /PEBP2 beta subunits are essential for differentiation of hematopoietic and bone cells, and their mutation is intimately related to the development of acute leukemias and cleidocranial dysplasia. Here, we present the crystal structures of the AML1/Runx-1/CBF alpha (Runt domain)-CBF beta (core domain)-C/EBP beta (b-Zip)-DNA, AML1/Runx-1/CBF alpha (Runt domain)-C/EBP beta (bZip)-DNA, and AML1/Runx-1/CBF alpha (Runt domain)DNA complexes. The hydrogen bonding network formed among CBF alpha (Runt domain) and CBF beta, and CBF alpha (Runt domain) and DNA revealed the allosteric regulation mechanism of CBF alpha (Runt domain)-DNA binding by CBF beta. The point mutations of CBF alpha related to the aforementioned diseases were also mapped and their effect on DNA binding is discussed.
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收藏
页码:755 / 767
页数:13
相关论文
共 58 条
[1]   A simple screening for mutant DNA binding proteins: Application to murine transcription factor PEBP2 alpha subunit, a founding member of the Runt domain protein family [J].
Akamatsu, Y ;
Tsukumo, S ;
Kagoshima, H ;
Tsurushita, N ;
Shigesada, K .
GENE, 1997, 185 (01) :111-117
[2]   Redox regulation of the DNA binding activity in transcription factor PEBP2 - The roles of two conserved cysteine residues [J].
Akamatsu, Y ;
Ohno, T ;
Hirota, K ;
Kagoshima, H ;
Yodoi, J ;
Shigesada, K .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (23) :14497-14500
[3]  
Barton K, 2000, BIOESSAYS, V22, P214, DOI 10.1002/(SICI)1521-1878(200003)22:3<214::AID-BIES2>3.3.CO
[4]  
2-9
[5]   The structure of GABPα/β:: An ETS domain ankyrin repeat heterodimer bound to DNA [J].
Batchelor, AH ;
Piper, DE ;
de la Brousse, FC ;
McKnight, SL ;
Wolberger, C .
SCIENCE, 1998, 279 (5353) :1037-1041
[6]   Three-dimensional structure of the Stat3β homodimer bound to DNA [J].
Becker, S ;
Groner, B ;
Müller, CW .
NATURE, 1998, 394 (6689) :145-151
[7]   The Ig fold of the core binding factor α Runt domain is a member of a family of structurally and functionally related Ig-fold DNA-binding domains [J].
Berardi, MJ ;
Sun, CH ;
Zehr, M ;
Abildgaard, F ;
Peng, J ;
Speck, NA ;
Bushweller, JH .
STRUCTURE WITH FOLDING & DESIGN, 1999, 7 (10) :1247-1256
[8]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[9]   Crystal structure of p50/p65 heterodimer of transcription factor NF-κB bound to DNA [J].
Chen, FE ;
Huang, DB ;
Chen, YQ ;
Ghosh, G .
NATURE, 1998, 391 (6665) :410-413
[10]   Structure of the DNA binding domains from NFAT, Fos and Jun bound specifically to DNA [J].
Chen, L ;
Glover, JNM ;
Hogan, PG ;
Rao, A ;
Harrison, SC .
NATURE, 1998, 392 (6671) :42-48