Accurate and precise structural ensembles of proteins and macromolecular complexes can be obtained with metainference, a recently proposed Bayesian inference method that integrates experimental information with prior knowledge and deals with all sources of errors in the data as well as with sample heterogeneity. The study of complex macromolecular systems, however, requires an extensive conformational sampling, which represents a separate challenge. To address such challenge and to exhaustively and efficiently generate structural ensembles we combine metainference with metadynamics and illustrate its application to the calculation of the free energy landscape of the alanine dipeptide.
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Univ Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, FranceUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Algret, Romain
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Fernandez-Martinez, Javier
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Shi, Yi
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Rockefeller Univ, Lab Mass Spectrometry & Gaseous Ion Chem, New York, NY 10065 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Shi, Yi
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Kim, Seung Joong
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Univ Calif San Francisco, Dept Pharmaceut Chem, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Univ Calif San Francisco, Calif Inst Quantitat Biosci QB3, San Francisco, CA 94158 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Kim, Seung Joong
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Pellarin, Riccardo
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Univ Calif San Francisco, Dept Pharmaceut Chem, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Univ Calif San Francisco, Calif Inst Quantitat Biosci QB3, San Francisco, CA 94158 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Pellarin, Riccardo
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Cimermancic, Peter
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Univ Calif San Francisco, Dept Pharmaceut Chem, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Univ Calif San Francisco, Calif Inst Quantitat Biosci QB3, San Francisco, CA 94158 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Cimermancic, Peter
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Cochet, Emilie
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Univ Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, FranceUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Cochet, Emilie
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Sali, Andrej
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Univ Calif San Francisco, Dept Pharmaceut Chem, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Univ Calif San Francisco, Calif Inst Quantitat Biosci QB3, San Francisco, CA 94158 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Sali, Andrej
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Chait, Brian T.
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Rockefeller Univ, Lab Mass Spectrometry & Gaseous Ion Chem, New York, NY 10065 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Chait, Brian T.
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Rout, Michael P.
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Rockefeller Univ, Lab Cellular & Struct Biol, New York, NY 10065 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Rout, Michael P.
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Dokudovskaya, Svetlana
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Univ Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, FranceUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
机构:
Univ Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, FranceUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Algret, Romain
;
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h-index:
机构:
Fernandez-Martinez, Javier
;
Shi, Yi
论文数: 0引用数: 0
h-index: 0
机构:
Rockefeller Univ, Lab Mass Spectrometry & Gaseous Ion Chem, New York, NY 10065 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Shi, Yi
;
Kim, Seung Joong
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Dept Pharmaceut Chem, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Univ Calif San Francisco, Calif Inst Quantitat Biosci QB3, San Francisco, CA 94158 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Kim, Seung Joong
;
Pellarin, Riccardo
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Dept Pharmaceut Chem, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Univ Calif San Francisco, Calif Inst Quantitat Biosci QB3, San Francisco, CA 94158 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Pellarin, Riccardo
;
Cimermancic, Peter
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Dept Pharmaceut Chem, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Univ Calif San Francisco, Calif Inst Quantitat Biosci QB3, San Francisco, CA 94158 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Cimermancic, Peter
;
Cochet, Emilie
论文数: 0引用数: 0
h-index: 0
机构:
Univ Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, FranceUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Cochet, Emilie
;
Sali, Andrej
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Dept Pharmaceut Chem, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Univ Calif San Francisco, Calif Inst Quantitat Biosci QB3, San Francisco, CA 94158 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Sali, Andrej
;
Chait, Brian T.
论文数: 0引用数: 0
h-index: 0
机构:
Rockefeller Univ, Lab Mass Spectrometry & Gaseous Ion Chem, New York, NY 10065 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Chait, Brian T.
;
Rout, Michael P.
论文数: 0引用数: 0
h-index: 0
机构:
Rockefeller Univ, Lab Cellular & Struct Biol, New York, NY 10065 USAUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France
Rout, Michael P.
;
Dokudovskaya, Svetlana
论文数: 0引用数: 0
h-index: 0
机构:
Univ Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, FranceUniv Paris 11, CNRS UMR 8126, Inst Gustave Roussy, F-94805 Villejuif, France