Multi-query sequence BLAST output examination with MuSeqBox

被引：25

作者：

Xing, LQ ^{[1
]}

Brendel, V

机构：

[1] Iowa State Univ Sci & Technol, Dept Zool & Genet, Ames, IA 50011 USA

[2] Iowa State Univ Sci & Technol, Dept Stat, Ames, IA 50011 USA

来源：

BIOINFORMATICS | 2001年 / 17卷 / 08期

基金：

美国国家科学基金会;

关键词：

D O I：

10.1093/bioinformatics/17.8.744

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

MuSeqBox is a program to parse BLAST output and store attributes of BLAST hits in tabular form. The user can apply a number of selection criteria to filter out hits with particular attributes. MuSeqBox provides a powerful annotation too] for large sets of query sequences that are simultaneously compared against a database with any of the standard stand-alone or network-client BLAST programs. We discuss such application to the problem of annotation and analysis of EST collections.

引用

页码：744 / 745

页数：2

共 6 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, SF
Madden, TL
Schaffer, AA
Zhang, JH
Zhang, Z
Miller, W
Lipman, DJ
[J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
[2] Errors in genome annotation
Brenner, SE
[J]. TRENDS IN GENETICS, 1999, 15 (04) : 132 - 133
[3] Gene discovery using the maize genome database ZmDB
Gai, XW
Lal, S
Xing, LQ
Brendel, V
Walbot, V
[J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 94 - 96
[4] The impact of comparative genomics on our understanding of evolution
Koonin, EV
Aravind, L
Kondrashov, AS
[J]. CELL, 2000, 101 (06) : 573 - 576
[5] SONNHAMMER ELL, 1994, COMPUT APPL BIOSCI, V10, P301
[6] Gene structure prediction by spliced alignment of genomic DNA with protein sequences: Increased accuracy by differential splice site scoring
Usuka, J
Brendel, V
[J]. JOURNAL OF MOLECULAR BIOLOGY, 2000, 297 (05) : 1075 - 1085

← 1 →