共 57 条
Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency
被引:111
作者:

Bammes, Benjamin E.
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机构:
Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
Baylor Coll Med, Grad Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Rochat, Ryan H.
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
Baylor Coll Med, Grad Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Jakana, Joanita
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Chen, Dong-Hua
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Chiu, Wah
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
Baylor Coll Med, Grad Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
机构:
[1] Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
[2] Baylor Coll Med, Grad Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA
基金:
美国国家卫生研究院;
关键词:
Cryo-EM;
Electron cryo-microscopy;
Direct detection device;
Active pixel sensor;
CMOS detector;
Nyquist frequency;
DIRECT-DETECTION DEVICE;
PIXEL SENSOR ARRAY;
CCD CAMERA;
IMAGES;
CRYOMICROSCOPY;
ACQUISITION;
PERFORMANCE;
PROTEIN;
OPTIMIZATION;
MICROSCOPY;
D O I:
10.1016/j.jsb.2012.01.008
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
One limitation in electron cryo-microscopy (cryo-EM) is the inability to recover high-resolution signal from the image-recording media at the full-resolution limit of the transmission electron microscope. Direct electron detection using CMOS-based sensors for digitally recording images has the potential to alleviate this shortcoming. Here, we report a practical performance evaluation of a Direct Detection Device (DDD (R)) for biological cryo-EM at two different microscope voltages: 200 and 300 kV. Our DDD images of amorphous and graphitized carbon show strong per-pixel contrast with image resolution near the theoretical sampling limit of the data. Single-particle reconstructions of two frozen-hydrated bacteriophages, P22 and epsilon 15, establish that the DDD is capable of recording usable signal for 3D reconstructions at about 4/5 of the Nyquist frequency, which is a vast improvement over the performance of conventional imaging media. We anticipate the unparalleled performance of this digital recording device will dramatically benefit cryo-EM for routine tomographic and single-particle structural determination of biological specimens. (C) 2012 Elsevier Inc. All rights reserved.
引用
收藏
页码:589 / 601
页数:13
相关论文
共 57 条
[1]
The resolution dependence of optimal exposures in liquid nitrogen temperature electron cryomicroscopy of catalase crystals
[J].
Baker, Lindsay A.
;
Smith, Eric A.
;
Bueler, Stephanie A.
;
Rubinstein, John L.
.
JOURNAL OF STRUCTURAL BIOLOGY,
2010, 169 (03)
:431-437

Baker, Lindsay A.
论文数: 0 引用数: 0
h-index: 0
机构:
Hosp Sick Children, Mol Struct & Funct Program, Res Inst, Toronto, ON, Canada
Univ Toronto, Dept Biochem, Toronto, ON M5S 1A1, Canada Hosp Sick Children, Mol Struct & Funct Program, Res Inst, Toronto, ON, Canada

Smith, Eric A.
论文数: 0 引用数: 0
h-index: 0
机构:
Hosp Sick Children, Mol Struct & Funct Program, Res Inst, Toronto, ON, Canada Hosp Sick Children, Mol Struct & Funct Program, Res Inst, Toronto, ON, Canada

Bueler, Stephanie A.
论文数: 0 引用数: 0
h-index: 0
机构:
Hosp Sick Children, Mol Struct & Funct Program, Res Inst, Toronto, ON, Canada Hosp Sick Children, Mol Struct & Funct Program, Res Inst, Toronto, ON, Canada

Rubinstein, John L.
论文数: 0 引用数: 0
h-index: 0
机构:
Hosp Sick Children, Mol Struct & Funct Program, Res Inst, Toronto, ON, Canada
Univ Toronto, Dept Biochem, Toronto, ON M5S 1A1, Canada Hosp Sick Children, Mol Struct & Funct Program, Res Inst, Toronto, ON, Canada
[2]
Practical performance evaluation of a 10k x 10k CCD for electron cryo-microscopy
[J].
Bammes, Benjamin E.
;
Rochat, Ryan H.
;
Jakana, Joanita
;
Chiu, Wah
.
JOURNAL OF STRUCTURAL BIOLOGY,
2011, 175 (03)
:384-393

Bammes, Benjamin E.
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
Baylor Coll Med, Grad Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Rochat, Ryan H.
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
Baylor Coll Med, Grad Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Jakana, Joanita
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Chiu, Wah
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
Baylor Coll Med, Grad Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
[3]
Radiation damage effects at four specimen temperatures from 4 to 100 K
[J].
Bammes, Benjamin E.
;
Jakana, Joanita
;
Schmid, Michael F.
;
Chiu, Wah
.
JOURNAL OF STRUCTURAL BIOLOGY,
2010, 169 (03)
:331-341

Bammes, Benjamin E.
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Jakana, Joanita
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Schmid, Michael F.
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Chiu, Wah
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Verna & Marrs McLean Dept Biochem & Mol Biol, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
[4]
Assessing the capabilities of a 4kx4k CCD camera for electron cryo-microscopy at 300kV
[J].
Booth, Christopher R.
;
Jakana, Joanita
;
Chiu, Wah
.
JOURNAL OF STRUCTURAL BIOLOGY,
2006, 156 (03)
:556-563

Booth, Christopher R.
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Jakana, Joanita
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Chiu, Wah
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
[5]
A 9 Å single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope
[J].
Booth, CR
;
Jiang, W
;
Baker, ML
;
Zhou, ZH
;
Ludtke, SJ
;
Chiu, W
.
JOURNAL OF STRUCTURAL BIOLOGY,
2004, 147 (02)
:116-127

Booth, CR
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Jiang, W
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Baker, ML
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Zhou, ZH
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Ludtke, SJ
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Chiu, W
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA
[6]
Determination of the fold of the core protein of hepatitis B virus ky electron cryomicroscopy
[J].
Bottcher, B
;
Wynne, SA
;
Crowther, RA
.
NATURE,
1997, 386 (6620)
:88-91

Bottcher, B
论文数: 0 引用数: 0
h-index: 0
机构:
MRC,MOL BIOL LAB,CAMBRIDGE CB2 2QH,ENGLAND MRC,MOL BIOL LAB,CAMBRIDGE CB2 2QH,ENGLAND

Wynne, SA
论文数: 0 引用数: 0
h-index: 0
机构:
MRC,MOL BIOL LAB,CAMBRIDGE CB2 2QH,ENGLAND MRC,MOL BIOL LAB,CAMBRIDGE CB2 2QH,ENGLAND

Crowther, RA
论文数: 0 引用数: 0
h-index: 0
机构:
MRC,MOL BIOL LAB,CAMBRIDGE CB2 2QH,ENGLAND MRC,MOL BIOL LAB,CAMBRIDGE CB2 2QH,ENGLAND
[7]
APPLICATIONS OF A SLOW-SCAN CCD CAMERA IN PROTEIN ELECTRON CRYSTALLOGRAPHY
[J].
BRINK, J
;
CHIU, W
.
JOURNAL OF STRUCTURAL BIOLOGY,
1994, 113 (01)
:23-34

BRINK, J
论文数: 0 引用数: 0
h-index: 0
机构:
BAYLOR COLL MED,W M KECK CTR COMPUTAT BIOL,HOUSTON,TX 77030 BAYLOR COLL MED,W M KECK CTR COMPUTAT BIOL,HOUSTON,TX 77030

CHIU, W
论文数: 0 引用数: 0
h-index: 0
机构:
BAYLOR COLL MED,W M KECK CTR COMPUTAT BIOL,HOUSTON,TX 77030 BAYLOR COLL MED,W M KECK CTR COMPUTAT BIOL,HOUSTON,TX 77030
[8]
Leginon: An automated system for acquisition of images from vitreous ice specimens
[J].
Carragher, B
;
Kisseberth, N
;
Kriegman, D
;
Milligan, RA
;
Potter, CS
;
Pulokas, J
;
Reilein, A
.
JOURNAL OF STRUCTURAL BIOLOGY,
2000, 132 (01)
:33-45

Carragher, B
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Illinois, Beckman Inst, Urbana, IL 61801 USA Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Kisseberth, N
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Kriegman, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Milligan, RA
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Potter, CS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Pulokas, J
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA

Reilein, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Beckman Inst, Urbana, IL 61801 USA
[9]
Achievable resolution from images of biological specimens acquired from a 4k x 4k CCD camera in a 300-kV electron cryomicroscope
[J].
Chen, Dong-Hua
;
Jakana, Joanita
;
Liu, Xiangan
;
Schmid, Michael F.
;
Chiu, Wah
.
JOURNAL OF STRUCTURAL BIOLOGY,
2008, 163 (01)
:45-52

Chen, Dong-Hua
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Jakana, Joanita
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Liu, Xiangan
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Schmid, Michael F.
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Chiu, Wah
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA
[10]
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus
[J].
Chen, Dong-Hua
;
Baker, Matthew L.
;
Hryc, Corey F.
;
DiMaio, Frank
;
Jakana, Joanita
;
Wu, Weimin
;
Dougherty, Matthew
;
Haase-Pettingell, Cameron
;
Schmid, Michael F.
;
Jiang, Wen
;
Baker, David
;
King, Jonathan A.
;
Chiu, Wah
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2011, 108 (04)
:1355-1360

Chen, Dong-Hua
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Baker, Matthew L.
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Hryc, Corey F.
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

DiMaio, Frank
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Dept Biochem, Seattle, WA 98195 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Jakana, Joanita
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Wu, Weimin
论文数: 0 引用数: 0
h-index: 0
机构:
Purdue Univ, Dept Biol Sci, W Lafayette, IN 47907 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Dougherty, Matthew
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Haase-Pettingell, Cameron
论文数: 0 引用数: 0
h-index: 0
机构:
MIT, Dept Biol, Cambridge, MA 02139 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Schmid, Michael F.
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Jiang, Wen
论文数: 0 引用数: 0
h-index: 0
机构:
Purdue Univ, Dept Biol Sci, W Lafayette, IN 47907 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Baker, David
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Dept Biochem, Seattle, WA 98195 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

King, Jonathan A.
论文数: 0 引用数: 0
h-index: 0
机构:
MIT, Dept Biol, Cambridge, MA 02139 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA

Chiu, Wah
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Verna & Marrs McLean Dept Biochem & Mol Biol, Houston, TX 77030 USA