JDotter: a Java']Java interface to multiple dotplots generated by dotter

被引：84

作者：

Brodie, R ^{[1
]}

Roper, RL ^{[1
]}

Upton, C ^{[1
]}

机构：

[1] Univ Victoria, Dept Biochem & Microbiol, Victoria, BC V8W 3P6, Canada

来源：

BIOINFORMATICS | 2004年 / 20卷 / 02期

关键词：

D O I：

10.1093/bioinformatics/btg406

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Summary: Java-Dotter (JDotter) is a platform-independent Java interactive interface for the Linux version of Dotter, a widely used program for generating dotplots of large DNA or protein sequences. JDotter runs as a client-server application and can send new sequences to the Dotter program for alignment as well as rapidly access a repository of preprocessed dotplots. JDotter also interfaces with a sequence database or file system to display supplementary feature data. Thus, JDotter greatly simplifies access to dotplot data in laboratories that deal with large numbers of genomes and have a multi-platform organization. .

引用

页码：279 / 281

页数：3

共 4 条

[1] Poxvirus orthologous clusters (POCs) [J].

Ehlers, A ;

Osborne, J ;

Slack, S ;

Roper, RL ;

Upton, C .

BIOINFORMATICS, 2002, 18 (11) :1544-1545

[2] Dotlet: diagonal plots in a Web browser [J].

Junier, T ;

Pagni, M .

BIOINFORMATICS, 2000, 16 (02) :178-179

[3]

SONNHAMMER ELL, 1995, GENE-COMBIS, V167, P1

[4] Poxvirus orthologous clusters: toward defining the minimum essential poxvirus genome [J].

Upton, C ;

Slack, S ;

Hunter, AL ;

Ehlers, A ;

Roper, RL .

JOURNAL OF VIROLOGY, 2003, 77 (13) :7590-7600

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