Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction

被引:296
作者
Fierz, Beat [1 ]
Chatterjee, Champak [1 ]
McGinty, Robert K. [1 ]
Bar-Dagan, Maya [1 ]
Raleigh, Daniel P. [2 ]
Muir, Tom W. [1 ]
机构
[1] Rockefeller Univ, Lab Synthet Prot Chem, New York, NY 10021 USA
[2] SUNY Stony Brook, Dept Chem, Stony Brook, NY 11794 USA
基金
美国国家卫生研究院; 瑞士国家科学基金会;
关键词
RNA-POLYMERASE-II; H4-K16; ACETYLATION; GENE-EXPRESSION; HUMAN-CELLS; NUCLEOSOME; FIBER; DYNAMICS; METHYLATION; UBIQUITIN; REVEALS;
D O I
10.1038/NCHEMBIO.501
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Regulation of chromatin structure involves histone posttranslational modifications that can modulate intrinsic properties of the chromatin fiber to change the chromatin state. We used chemically defined nucleosome arrays to demonstrate that H2B ubiquitylation (uH2B), a modification associated with transcription, interferes with chromatin compaction and leads to an open and biochemically accessible fiber conformation. Notably, these effects were specific for ubiquitin, as compaction of chromatin modified with a similar ubiquitin-sized protein, Hub1, was only weakly affected. Applying a fluorescence-based method, we found that uH2B acts through a mechanism distinct from H4 tail acetylation, a modification known to disrupt chromatin folding. Finally, incorporation of both uH2B and acetylated H4 resulted in synergistic inhibition of higher-order chromatin structure formation, possibly a result of their distinct modes of action.
引用
收藏
页码:113 / 119
页数:7
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[1]   The use of site-directed fluorophore labeling and donor-donor energy migration to investigate solution structure and dynamics in proteins [J].
Bergström, F ;
Hägglöf, P ;
Karolin, J ;
Ny, T ;
Johansson, LBÅ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (22) :12477-12481
[2]   Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability [J].
Chandrasekharan, Mahesh B. ;
Huang, Fu ;
Sun, Zu-Wen .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (39) :16686-16691
[3]  
Chatterjee C, 2010, NAT CHEM BIOL, V6, P267, DOI [10.1038/NCHEMBIO.315, 10.1038/nchembio.315]
[4]   A charged and contoured surface on the nucleosome regulates chromatin compaction [J].
Chodaparambil, Jayanth V. ;
Barbera, Andrew J. ;
Lu, Xu ;
Kaye, Kenneth M. ;
Hansen, Jeffrey C. ;
Luger, Karolin .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2007, 14 (11) :1105-1107
[5]   Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure [J].
Cui, Y ;
Bustamante, C .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (01) :127-132
[6]   CHROMATIN STRUCTURE OF ERYTHROID-SPECIFIC GENES OF IMMATURE AND MATURE CHICKEN ERYTHROCYTES [J].
DELCUVE, GP ;
DAVIE, JR .
BIOCHEMICAL JOURNAL, 1989, 263 (01) :179-186
[7]   Sedimentation velocity analysis of highly heterogeneous systems [J].
Demeler, B ;
van Holde, KE .
ANALYTICAL BIOCHEMISTRY, 2004, 335 (02) :279-288
[8]  
DEMELER B, 2009, ULTRASCAN VERSION 9
[9]   Role of a ubiquitin-like modification in polarized morphogenesis [J].
Dittmar, GAG ;
Wilkinson, CRM ;
Jedrzejewski, PT ;
Finley, D .
SCIENCE, 2002, 295 (5564) :2442-2446
[10]   Chromatin fiber folding: Requirement for the histone H4N-terminal tail [J].
Dorigo, B ;
Schalch, T ;
Bystricky, K ;
Richmond, TJ .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 327 (01) :85-96