Field data analysis of cytoplasmic inheritance of dairy and fitness-related traits in cattle

Field data of the Austrian Simmental population were analysed using restricted maximum likelihood (REML) with an animal model where additive direct, additive maternal and cytoplasmic effects were treated as random and the effect of the year of first calving as fixed. Traits analysed were milk yield, fat and protein content, persistency, days open and herd life. All dairy traits were pre-adjusted for best linear unbiased prediction (BLUP) herd-year effects, milk yield additionally for season, age at first calving and days open. After applying specific data restrictions, the number of records for the various traits ranged from 3360 to 51889. Identification of cow lineages was based an pedigree information from the official milk recording scheme, with a span of at least four and up to 16 generations. The number of lineages per trait varied and ranged from 484 to 3195, with an average size of 15 members (for herd life 7). Evaluations of the relevant variance components for the dairy and fitness-related traits investigated were separate for the first three lactations. The estimated variance components for cytoplasmic effects were close to zero for all dairy traits with the exception of first lactation milk yield, where a significant value of 2.0% of the total phenotypic variance was found. Significant contributions of cytoplasmic lineages to total variance in all lactations, however, were estimated for persistency (2.6 to 3.8%), days open (1.8 to 2.9%) and for both true and functional herd life (46% each). The portions of additive maternal variance and covariance between additive direct and additive maternal effects on total variance were very close to zero for all traits investigated. The maximum differences between BLUP lineage effects were 373 kg for first lactation milk yield, 44 days for days open (first lactation), 1.6 and 2.8 years for true and functional herd life and, on average, 1.0 kg for standard deviation of test day milk yields (persistency) of the first three lactations. Removing the cytoplasmic effect from the model led to increased estimates of the additive direct heritability. Further model aspects such as interaction between additive and cytoplasmic gene effects and possible confounding between cytoplasmic and herd effects are discussed.