Defect structure of macromolecular crystals

被引:100
作者
Malkin, AJ [1 ]
Kuznetsov, YG [1 ]
McPherson, A [1 ]
机构
[1] UNIV CALIF RIVERSIDE, DEPT BIOCHEM, RIVERSIDE, CA 92521 USA
基金
美国国家航空航天局;
关键词
D O I
10.1006/jsbi.1996.0077
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Disorder in macromolecular crystals arises from several sources. Among the most important are thermal motion and the inherent mobility of the molecules. These cause statistical misalignment about mean lattice points and structural heterogeneity of the molecules. Defects in the crystal lattice, however, could also significantly affect the resolution and quality of diffraction data collected from some crystals. There is a considerable diversity in the sources of defects found in crystals, such as impurity incorporation and fluctuations of growth conditions, and the defects occur in a variety of structural forms. We have used in situ atomic force microscopy to visualize examples of several of the different classes of defects that occur in protein and virus crystals, ranging from unoccupied lattice sites (vacancies) to linear defects to stacking faults. In addition, we have calculated the defect density in several different macromolecular crystals and found that it varied in the range of 10(4)-10(6) cm(-2). Indeed, some preliminary evidence suggests that the ultimate resolution to which a crystal diffracts maybe a composite function of its inherent statistical disorder and its defect structure, density, and distribution. (C) 1996 Academic Press, Inc.
引用
收藏
页码:124 / 137
页数:14
相关论文
共 22 条
  • [1] COWLEY JM, 1975, DIFFRACTION PHYSICS
  • [2] PROTEIN CRYSTAL-GROWTH IN MICROGRAVITY
    DELUCAS, LJ
    SMITH, CD
    SMITH, HW
    VIJAYKUMAR, S
    SENADHI, SE
    EALICK, SE
    CARTER, DC
    SNYDER, RS
    WEBER, PC
    SALEMME, FR
    OHLENDORF, DH
    EINSPAHR, HM
    CLANCY, LL
    NAVIA, MA
    MCKEEVER, BM
    NAGABHUSHAN, TL
    NELSON, G
    MCPHERSON, A
    KOSZELAK, S
    TAYLOR, G
    STAMMERS, D
    POWELL, K
    DARBY, G
    BUGG, CE
    [J]. SCIENCE, 1989, 246 (4930) : 651 - 654
  • [3] LYSOZYME CRYSTAL-GROWTH STUDIED BY ATOMIC FORCE MICROSCOPY
    DURBIN, SD
    CARLSON, WE
    [J]. JOURNAL OF CRYSTAL GROWTH, 1992, 122 (1-4) : 71 - 79
  • [4] IN-SITU STUDIES OF PROTEIN CRYSTAL-GROWTH BY ATOMIC-FORCE MICROSCOPY
    DURBIN, SD
    CARLSON, WE
    SAROS, MT
    [J]. JOURNAL OF PHYSICS D-APPLIED PHYSICS, 1993, 26 (8B) : B128 - B132
  • [5] THE INFLUENCE OF DISLOCATIONS ON CRYSTAL GROWTH
    FRANK, FC
    [J]. DISCUSSIONS OF THE FARADAY SOCIETY, 1949, (05): : 48 - 54
  • [6] Crystallogenesis of biological macromolecules. Biological, microgravity and other physicochemical aspects
    Giege, R
    Drenth, J
    Ducruix, A
    McPherson, A
    Saenger, W
    [J]. PROGRESS IN CRYSTAL GROWTH AND CHARACTERIZATION OF MATERIALS, 1995, 30 (04) : 237 - 281
  • [7] Helliwell J. R., 1992, MACROMOLECULAR CRYST
  • [8] STRUCTURES OF 3 CRYSTAL FORMS OF THE SWEET PROTEIN THAUMATIN
    KO, TP
    DAY, J
    GREENWOOD, A
    MCPHERSON, A
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1994, 50 : 813 - 825
  • [9] DETERMINATION OF 3 CRYSTAL-STRUCTURES OF CANAVALIN BY MOLECULAR REPLACEMENT
    KO, TP
    NG, JD
    DAY, J
    GREENWOOD, A
    MCPHERSON, A
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1993, 49 : 478 - 489
  • [10] OBSERVATION OF GROWTH STEPS, SPIRAL DISLOCATIONS AND MOLECULAR PACKING ON THE SURFACE OF LYSOZYME CRYSTALS WITH THE ATOMIC-FORCE MICROSCOPE
    KONNERT, JH
    DANTONIO, P
    WARD, KB
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 : 603 - 613