The missing graphical user interface for genomics

被引:7
作者
Schatz, Michael C. [1 ]
机构
[1] Cold Spring Harbor Lab, Ctr Quantitat Biol, Cold Spring Harbor, NY 11724 USA
来源
GENOME BIOLOGY | 2010年 / 11卷 / 08期
关键词
GALAXY;
D O I
10.1186/gb-2010-11-8-128
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The Galaxy package empowers regular users to perform rich DNA sequence analysis through a much-needed and user-friendly graphical web interface.
引用
收藏
页数:3
相关论文
共 9 条
[1]   Manipulation of FASTQ data with Galaxy [J].
Blankenberg, Daniel ;
Gordon, Assaf ;
Von Kuster, Gregory ;
Coraor, Nathan ;
Taylor, James ;
Nekrutenko, Anton .
BIOINFORMATICS, 2010, 26 (14) :1783-1785
[3]   A map of open chromatin in human pancreatic islets [J].
Gaulton, Kyle J. ;
Nammo, Takao ;
Pasquali, Lorenzo ;
Simon, Jeremy M. ;
Giresi, Paul G. ;
Fogarty, Marie P. ;
Panhuis, Tami M. ;
Mieczkowski, Piotr ;
Secchi, Antonio ;
Bosco, Domenico ;
Berney, Thierry ;
Montanya, Eduard ;
Mohlke, Karen L. ;
Lieb, Jason D. ;
Ferrer, Jorge .
NATURE GENETICS, 2010, 42 (03) :255-U41
[4]   Bioconductor: open software development for computational biology and bioinformatics [J].
Gentleman, RC ;
Carey, VJ ;
Bates, DM ;
Bolstad, B ;
Dettling, M ;
Dudoit, S ;
Ellis, B ;
Gautier, L ;
Ge, YC ;
Gentry, J ;
Hornik, K ;
Hothorn, T ;
Huber, W ;
Iacus, S ;
Irizarry, R ;
Leisch, F ;
Li, C ;
Maechler, M ;
Rossini, AJ ;
Sawitzki, G ;
Smith, C ;
Smyth, G ;
Tierney, L ;
Yang, JYH ;
Zhang, JH .
GENOME BIOLOGY, 2004, 5 (10)
[5]   Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences [J].
Goecks, Jeremy ;
Nekrutenko, Anton ;
Taylor, James .
GENOME BIOLOGY, 2010, 11 (08)
[6]   Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [J].
Langmead, Ben ;
Trapnell, Cole ;
Pop, Mihai ;
Salzberg, Steven L. .
GENOME BIOLOGY, 2009, 10 (03)
[7]   Fast and accurate short read alignment with Burrows-Wheeler transform [J].
Li, Heng ;
Durbin, Richard .
BIOINFORMATICS, 2009, 25 (14) :1754-1760
[8]   Altered Histone Acetylation Is Associated with Age-Dependent Memory Impairment in Mice [J].
Peleg, Shahaf ;
Sananbenesi, Farahnaz ;
Zovoilis, Athanasios ;
Burkhardt, Susanne ;
Bahari-Javan, Sanaz ;
Agis-Balboa, Roberto Carlos ;
Cota, Perla ;
Wittnam, Jessica Lee ;
Gogol-Doering, Andreas ;
Opitz, Lennart ;
Salinas-Riester, Gabriella ;
Dettenhofer, Markus ;
Kang, Hui ;
Farinelli, Laurent ;
Chen, Wei ;
Fischer, Andre .
SCIENCE, 2010, 328 (5979) :753-756
[9]   Windshield splatter analysis with the Galaxy metagenomic pipeline [J].
Pond, Sergei Kosakovsky ;
Wadhawan, Samir ;
Chiaromonte, Francesca ;
Ananda, Guruprasad ;
Chung, Wen-Yu ;
Taylor, James ;
Nekrutenko, Anton .
GENOME RESEARCH, 2009, 19 (11) :2144-2153