DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

被引：100

作者：

Wehe, Andre ^{[1
]}

Bansal, Mukul S. ^{[1
]}

Burleigh, J. Gordon ^{[2
]}

Eulenstein, Oliver ^{[1
]}

机构：

[1] Iowa State Univ, Dept Comp Sci, Ames, IA 50011 USA

[2] NESCent, Durham, NC 27705 USA

来源：

BIOINFORMATICS | 2008年 / 24卷 / 13期

关键词：

D O I：

10.1093/bioinformatics/btn230

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

DupTree is a new software program for inferring rooted species trees from collections of gene trees using the gene tree parsimony approach. The program implements a novel algorithm that significantly improves upon the run time of standard search heuristics for gene tree parsimony, and enables the first truly genome-scale phylogenetic analyses. In addition, DupTree allows users to examine alternate rootings and to weight the reconciliation costs for gene trees. DupTree is an open source project written in C.

引用

页码：1540 / 1541

页数：2

共 15 条

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