Chado Controller: advanced annotation management with a community annotation system

被引：8

作者：

Guignon, Valentin ^{[1
,2
]}

Droc, Gaetan ^{[1
]}

Alaux, Michael ^{[3
]}

Baurens, Franc-Christophe ^{[1
]}

Garsmeur, Olivier ^{[1
]}

Poiron, Claire ^{[1
]}

Carver, Tim ^{[4
]}

Rouard, Mathieu ^{[2
]}

Bocs, Stephanie ^{[1
]}

机构：

[1] CIRAD, UMR AGAP, F-34398 Montpellier, France

[2] Biovers Int, CfL Programme, F-34397 Montpellier, France

[3] INRA Ctr Versailles Grignon, Unite Rech Genom Info, UR 1164, Versailles, France

[4] Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England

来源：

BIOINFORMATICS | 2012年 / 28卷 / 07期

关键词：

GENOME BROWSER; DATABASE;

D O I：

10.1093/bioinformatics/bts046

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation ( with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all modified features. The Chado controller uses PostgreSQL and Perl.

引用

页码：1054 / 1056

页数：3

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