GraFix: sample preparation for single-particle electron cryomicroscopy

被引:399
作者
Kastner, Berthold [1 ]
Fischer, Niels [2 ]
Golas, Monika Mariola [2 ]
Sander, Bjoern [2 ]
Dube, Prakash [2 ]
Boehringer, Daniel [2 ]
Hartmuth, Klaus [1 ]
Deckert, Jochen [1 ]
Hauer, Florian [2 ]
Wolf, Elmar [1 ]
Uchtenhagen, Hannes [2 ]
Urlaub, Henning [3 ]
Herzog, Franz [5 ]
Peters, Jan Michael [5 ]
Poerschke, Dietmar [4 ]
Hrmann, Reinhard Lu [1 ]
Stark, Holger [2 ]
机构
[1] Max Planck Inst Biophys Chem, Dept Cellular Biochem, D-37077 Gottingen, Germany
[2] Max Planck Inst Biophys Chem, Electron Cryomicroscopy Grp 3D, D-37077 Gottingen, Germany
[3] Max Planck Inst Biophys Chem, Mass Spectrometry Grp, D-37077 Gottingen, Germany
[4] Max Planck Inst Biophys Chem, Biomol Dynam Grp, D-37077 Gottingen, Germany
[5] Res Inst Mol Pathol, A-1030 Vienna, Austria
关键词
D O I
10.1038/NMETH1139
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We developed a method, named GraFix, that considerably improves sample quality for structure determination by single-particle electron cryomicroscopy (cryo-EM). GraFix uses a glycerol gradient centrifugation step in which the complexes are centrifuged into an increasing concentration of a chemical fixation reagent to prevent aggregation and to stabilize individual macromolecules. The method can be used to prepare samples for negative-stain, cryo-negative-stain and, particularly, unstained cryo-EM.
引用
收藏
页码:53 / 55
页数:3
相关论文
共 15 条
[1]   Structural basis for mRNA and tRNA positioning on the ribosome [J].
Berk, Veysel ;
Zhang, Wen ;
Pai, Raj D. ;
Cate, Jamie H. Doudna .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (43) :15830-15834
[2]   Three-dimensional structure of a pre-catalytic human spliceosomal complex B [J].
Boehringer, D ;
Makarov, EM ;
Sander, B ;
Makarova, OV ;
Kastner, B ;
Lührmann, R ;
Stark, H .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2004, 11 (05) :463-468
[3]   Electron cryomicroscopy of biological machines at subnanometer resolution [J].
Chiu, W ;
Baker, ML ;
Jiang, W ;
Dougherty, M ;
Schmid, MF .
STRUCTURE, 2005, 13 (03) :363-372
[4]   Localization of the coactivator Cdh1 and the cullin subunit Apc2 in a cryo-electron microscopy model of vertebrate APC/C [J].
Dube, P ;
Herzog, F ;
Gieffers, C ;
Sander, B ;
Riedel, D ;
Müller, SA ;
Engel, A ;
Peters, JM ;
Stark, H .
MOLECULAR CELL, 2005, 20 (06) :867-879
[5]   Proteome survey reveals modularity of the yeast cell machinery [J].
Gavin, AC ;
Aloy, P ;
Grandi, P ;
Krause, R ;
Boesche, M ;
Marzioch, M ;
Rau, C ;
Jensen, LJ ;
Bastuck, S ;
Dümpelfeld, B ;
Edelmann, A ;
Heurtier, MA ;
Hoffman, V ;
Hoefert, C ;
Klein, K ;
Hudak, M ;
Michon, AM ;
Schelder, M ;
Schirle, M ;
Remor, M ;
Rudi, T ;
Hooper, S ;
Bauer, A ;
Bouwmeester, T ;
Casari, G ;
Drewes, G ;
Neubauer, G ;
Rick, JM ;
Kuster, B ;
Bork, P ;
Russell, RB ;
Superti-Furga, G .
NATURE, 2006, 440 (7084) :631-636
[6]   Molecular architecture of the multiprotein splicing factor SF3b [J].
Golas, MM ;
Sander, B ;
Will, CL ;
Lührmann, R ;
Stark, H .
SCIENCE, 2003, 300 (5621) :980-984
[7]   Signal recognition particle receptor exposes the ribosomal translocon binding site [J].
Halic, M ;
Gartmann, M ;
Schlenker, O ;
Mielke, T ;
Pool, MR ;
Sinning, I ;
Beckmann, R .
SCIENCE, 2006, 312 (5774) :745-747
[8]   GLUTARALDEHYDE - ROLE IN ELECTRON-MICROSCOPY [J].
HAYAT, MA .
MICRON AND MICROSCOPICA ACTA, 1986, 17 (02) :115-135
[9]   Post-crystallization treatments for improving diffraction quality of protein crystals [J].
Heras, B ;
Martin, JL .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2005, 61 :1173-1180
[10]   A gentle vapor-diffusion technique for cross-linking of protein crystals for cryocrystallography [J].
Lusty, CJ .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1999, 32 :106-112