Accelerated superposition state molecular dynamics for condensed phase systems

被引:6
作者
Ceotto, Michele [3 ]
Ayton, Gary S. [1 ,2 ]
Voth, Gregory A. [1 ,2 ]
机构
[1] Univ Utah, Dept Chem, Salt Lake City, UT 84112 USA
[2] Univ Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
[3] Univ Milan, Dipartimento Chim Fis & Elettrochim, I-20133 Milan, Italy
基金
美国国家科学基金会;
关键词
D O I
10.1021/ct7003275
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An extension of superposition state molecular dynamics (SSMD) [Venkatnathan and Voth J. Chem. Theory Comput. 2005, 1, 36] is presented with the goal to accelerate timescales and enable the study of "long-time" phenomena for condensed phase systems. It does not require any a priori knowledge about final and transition state configurations, or specific topologies. The system is induced to explore new configurations by virtue of a fictitious (free-particle-like) accelerating potential. The acceleration method can be applied to all degrees of freedom in the system and can be applied to condensed phases and fluids.
引用
收藏
页码:560 / 568
页数:9
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