Accelerated superposition state molecular dynamics for condensed phase systems
被引:6
作者:
Ceotto, Michele
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机构:
Univ Milan, Dipartimento Chim Fis & Elettrochim, I-20133 Milan, ItalyUniv Utah, Dept Chem, Salt Lake City, UT 84112 USA
Ceotto, Michele
[3
]
Ayton, Gary S.
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机构:
Univ Utah, Dept Chem, Salt Lake City, UT 84112 USA
Univ Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USAUniv Utah, Dept Chem, Salt Lake City, UT 84112 USA
Ayton, Gary S.
[1
,2
]
Voth, Gregory A.
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Univ Utah, Dept Chem, Salt Lake City, UT 84112 USA
Univ Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USAUniv Utah, Dept Chem, Salt Lake City, UT 84112 USA
Voth, Gregory A.
[1
,2
]
机构:
[1] Univ Utah, Dept Chem, Salt Lake City, UT 84112 USA
[2] Univ Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
An extension of superposition state molecular dynamics (SSMD) [Venkatnathan and Voth J. Chem. Theory Comput. 2005, 1, 36] is presented with the goal to accelerate timescales and enable the study of "long-time" phenomena for condensed phase systems. It does not require any a priori knowledge about final and transition state configurations, or specific topologies. The system is induced to explore new configurations by virtue of a fictitious (free-particle-like) accelerating potential. The acceleration method can be applied to all degrees of freedom in the system and can be applied to condensed phases and fluids.