Peach: A simple perl-based system for distributed computation and its application to cryo-EM data processing - Ways & means

被引:15
作者
Leong, PA
Heymann, JB
Jensen, GJ
机构
[1] CALTECH, Div Biol, Pasadena, CA 91125 USA
[2] CALTECH, Dept Appl Phys, Pasadena, CA 91125 USA
[3] NIAMSD, Struct Biol Res Lab, NIH, Bethesda, MD 20892 USA
关键词
D O I
10.1016/j.str.2005.01.015
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A simple distributed processing system named "Peach" was developed to meet the rising computational demands of modern structural biology (and other) laboratories without additional expense by using existing hardware resources more efficiently. A central server distributes jobs to idle workstations in such a way that each computer is used maximally, but without disturbing intermittent interactive users. As compared to other distributed systems, Peach is simple, easy to install, easy to administer, easy to use, scalable, and robust. While it was designed to queue and distribute large numbers of small tasks to participating computers, it can also be used to send single jobs automatically to the fastest currently available computer and/or survey the activity of an entire laboratory's computers. Tests of robustness and scalability are reported, as are three specific electron cryomicroscopy applications where Peach enabled projects that would not otherwise have been feasible without an expensive, dedicated cluster.
引用
收藏
页码:505 / 511
页数:7
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