A novel configurational-bias Monte Carlo method for lattice polymers: Application to molecules with multicyclic architectures

被引:18
作者
Abreu, CRA [1 ]
Escobedo, FA [1 ]
机构
[1] Cornell Univ, Sch Chem & Biomol Engn, Ithaca, NY 14853 USA
关键词
D O I
10.1021/ma050725t
中图分类号
O63 [高分子化学(高聚物)];
学科分类号
070305 ; 080501 ; 081704 ;
摘要
A new configurational-bias Monte Carlo (CBMC) method is developed for lattice polymer simulation. In contrast to usual approaches, no particular structure is assumed a priori. Instead, any regular lattice (whose sites are connected to their neighbors by the same vectors) can be used. The method includes new features such as an algorithm to distinguish all conformations of short ideal chains in regular lattices and a simple selection scheme that can improve general CBMC methods. The method is suitable for simulating molecules with branches and/or closed cycles, allowing the study of polymers with complex, well-defined architectures. It was applied to simulate the conformational and thermal properties of multicyclic molecules in dilute solution. The results indicate systematic changes in the behavior of topologically constrained polymers, such as a shrinking of the radius of gyration, a slight reduction in scaling exponents, and an increase of the globule-coil transition temperatures.
引用
收藏
页码:8532 / 8545
页数:14
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[1]   Improved design of stable and fast-folding model proteins [J].
Abkevich, VI ;
Gutin, AM ;
Shakhnovich, EI .
FOLDING & DESIGN, 1996, 1 (03) :221-230
[2]  
ANTONIETTI M, 1988, MAKROMOL CHEM-RAPID, V9, P423
[3]   The origin and extent of coarse-grained regularities in protein internal packing [J].
Bagci, Z ;
Kloczkowski, A ;
Jernigan, RL ;
Bahar, I .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2003, 53 (01) :56-67
[4]   Residue coordination in proteins conforms to the closest packing of spheres [J].
Bagci, Z ;
Jernigan, RL ;
Bahar, I .
POLYMER, 2002, 43 (02) :451-459
[5]   An "endless" route to cyclic polymers [J].
Bielawski, CW ;
Benitez, D ;
Grubbs, RH .
SCIENCE, 2002, 297 (5589) :2041-2044
[6]   THE BOND FLUCTUATION METHOD - A NEW EFFECTIVE ALGORITHM FOR THE DYNAMICS OF POLYMERS IN ALL SPATIAL DIMENSIONS [J].
CARMESIN, I ;
KREMER, K .
MACROMOLECULES, 1988, 21 (09) :2819-2823
[7]   A Monte Carlo simulation of coarse-grained poly (silylenemethylene) and poly(dimethylsilylenemethylene) melts [J].
Chen, DH ;
Mattice, WL .
POLYMER, 2004, 45 (11) :3877-3883
[8]   A configurational-bias approach for the simulation of inner sections of linear and cyclic molecules [J].
Chen, Z ;
Escobedo, FA .
JOURNAL OF CHEMICAL PHYSICS, 2000, 113 (24) :11382-11392
[9]   Building programmable jigsaw puzzles with RNA [J].
Chworos, A ;
Severcan, I ;
Koyfman, AY ;
Weinkam, P ;
Oroudjev, E ;
Hansma, HG ;
Jaeger, L .
SCIENCE, 2004, 306 (5704) :2068-2072
[10]   ESTIMATION OF THE CHEMICAL-POTENTIAL OF CHAIN MOLECULES BY SIMULATION [J].
DEPABLO, JJ ;
LASO, M ;
SUTER, UW .
JOURNAL OF CHEMICAL PHYSICS, 1992, 96 (08) :6157-6162