CASP infrastructure;
protein structure prediction;
evaluation methods;
SPICE;
D O I:
10.1002/prot.21653
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
We outline the main tasks performed by the Protein Structure Prediction Center in support of the CASP7 experiment and provide a brief review of the major measures used in the automatic evaluation of predictions. We describe in more detail the software developed to facilitate analysis of modeling success over and beyond the available templates and the adopted Java-based tool enabling visualization of multiple structural superpositions between target and several models/templates. We also give an overview of the CASP infrastructure provided by the Center and discuss the organization of the results web pages available through http:// predictioncenter.org.
机构:
Washington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Washington Univ, Dept Genet, St Louis, MO 63110 USAWashington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Dowell, Robin D.
;
Jokerst, Rodney M.
论文数: 0引用数: 0
h-index: 0
机构:
Washington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Washington Univ, Dept Genet, St Louis, MO 63110 USAWashington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Jokerst, Rodney M.
;
Day, Allen
论文数: 0引用数: 0
h-index: 0
机构:
Cold Spring Harbor Lab, 1 Bungtown Rd, Cold Spring Harbor, NY 11724 USAWashington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Day, Allen
;
Eddy, Sean R.
论文数: 0引用数: 0
h-index: 0
机构:
Washington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Washington Univ, Dept Genet, St Louis, MO 63110 USAWashington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Eddy, Sean R.
;
Stein, Lincoln
论文数: 0引用数: 0
h-index: 0
机构:
Cold Spring Harbor Lab, 1 Bungtown Rd, Cold Spring Harbor, NY 11724 USAWashington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
机构:
Uppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, Sweden
Lawrence Livermore Natl Lab, Livermore, CA USAUppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, Sweden
Hvidsten, Torgeir R.
;
Kryshtafovych, Andriy
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Livermore, CA USAUppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, Sweden
Kryshtafovych, Andriy
;
Komorowski, Jan
论文数: 0引用数: 0
h-index: 0
机构:
Uppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, SwedenUppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, Sweden
Komorowski, Jan
;
Fidelis, Krzysztof
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Livermore, CA USAUppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, Sweden
机构:
Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USALawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USA
Kryshtafovych, A
;
Milostan, M
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USALawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USA
Milostan, M
;
Szajkowski, L
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USALawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USA
Szajkowski, L
;
Daniluk, P
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USALawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USA
Daniluk, P
;
Fidelis, K
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USALawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USA
机构:
Washington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Washington Univ, Dept Genet, St Louis, MO 63110 USAWashington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Dowell, Robin D.
;
Jokerst, Rodney M.
论文数: 0引用数: 0
h-index: 0
机构:
Washington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Washington Univ, Dept Genet, St Louis, MO 63110 USAWashington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Jokerst, Rodney M.
;
Day, Allen
论文数: 0引用数: 0
h-index: 0
机构:
Cold Spring Harbor Lab, 1 Bungtown Rd, Cold Spring Harbor, NY 11724 USAWashington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Day, Allen
;
Eddy, Sean R.
论文数: 0引用数: 0
h-index: 0
机构:
Washington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Washington Univ, Dept Genet, St Louis, MO 63110 USAWashington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
Eddy, Sean R.
;
Stein, Lincoln
论文数: 0引用数: 0
h-index: 0
机构:
Cold Spring Harbor Lab, 1 Bungtown Rd, Cold Spring Harbor, NY 11724 USAWashington Univ, Howard Hughes Med Inst, St Louis, MO 63110 USA
机构:
Uppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, Sweden
Lawrence Livermore Natl Lab, Livermore, CA USAUppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, Sweden
Hvidsten, Torgeir R.
;
Kryshtafovych, Andriy
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Livermore, CA USAUppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, Sweden
Kryshtafovych, Andriy
;
Komorowski, Jan
论文数: 0引用数: 0
h-index: 0
机构:
Uppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, SwedenUppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, Sweden
Komorowski, Jan
;
Fidelis, Krzysztof
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Livermore, CA USAUppsala Univ, Linnaeus Ctr Bioinformat, Uppsala, Sweden
机构:
Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USALawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USA
Kryshtafovych, A
;
Milostan, M
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USALawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USA
Milostan, M
;
Szajkowski, L
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USALawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USA
Szajkowski, L
;
Daniluk, P
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USALawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USA
Daniluk, P
;
Fidelis, K
论文数: 0引用数: 0
h-index: 0
机构:
Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USALawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA 94551 USA