Neural network models of potential energy surfaces: Prototypical examples

被引:78
作者
Witkoskie, JB [1 ]
Doren, DJ [1 ]
机构
[1] Univ Delaware, Dept Chem & Biochem, Newark, DE 19716 USA
关键词
D O I
10.1021/ct049976i
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Neural networks can be used generate potential energy hypersurfaces by fitting to a data set of energies at discrete geometries, as might be obtained from ab initio calculations. Prior work has shown that this method can generate accurate fits in complex systems of several dimensions. The present paper explores fundamental properties of neural network potential representations in some simple prototypes of one, two, and three dimensions. Optimal fits to the data are achieved by adjusting the network parameters using an extended Kalman filtering algorithm, which is described in detail. The examples provide insight into the relationships between the form of the function being fit, the amount of data needed for an adequate fit, and the optimal network configuration and number of neurons needed. The quality of the network interpolation is substantially improved if gradients as well as the energy are available for fitting. The fitting algorithm is effective in providing an accurate interpolation of the underlying potential function even when random noise is added to the data used in the fit.
引用
收藏
页码:14 / 23
页数:10
相关论文
共 47 条
[1]  
[Anonymous], 1974, APPL OPTIMAL ESTIMAT
[2]   Molecular dynamics simulation with an ab initio potential energy function and finite element interpolation:: The photoisomerization of cis-stilbene in solution [J].
Berweger, CD ;
van Gunsteren, WF ;
Müller-Plathe, F .
JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (21) :8773-8781
[3]  
BETRENS RPA, 1999, J CHEM PHYS, V111, P816
[4]   The fitting of potential energy and transition moment functions using neural networks:: transition probabilities in OH (A2Σ+→X2Π) [J].
Bittencourt, ACP ;
Prudente, FV ;
Vianna, JDM .
CHEMICAL PHYSICS, 2004, 297 (1-3) :153-161
[5]   ADAPTIVE, GLOBAL, EXTENDED KALMAN FILTERS FOR TRAINING FEEDFORWARD NEURAL NETWORKS [J].
BLANK, TB ;
BROWN, SD .
JOURNAL OF CHEMOMETRICS, 1994, 8 (06) :391-407
[6]   NEURAL-NETWORK MODELS OF POTENTIAL-ENERGY SURFACES [J].
BLANK, TB ;
BROWN, SD ;
CALHOUN, AW ;
DOREN, DJ .
JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (10) :4129-4137
[7]   A refined H-3 potential energy surface [J].
Boothroyd, AI ;
Keogh, WJ ;
Martin, PG ;
Peterson, MR .
JOURNAL OF CHEMICAL PHYSICS, 1996, 104 (18) :7139-7152
[8]   Combining ab initio computations, neural networks, and diffusion Monte Carlo: An efficient method to treat weakly bound molecules [J].
Brown, DFR ;
Gibbs, MN ;
Clary, DC .
JOURNAL OF CHEMICAL PHYSICS, 1996, 105 (17) :7597-7604
[9]   Development of transferable interaction models for water.: IV.: A flexible, all-atom polarizable potential (TTM2-F) based on geometry dependent charges derived from an ab initio monomer dipole moment surface [J].
Burnham, CJ ;
Xantheas, SS .
JOURNAL OF CHEMICAL PHYSICS, 2002, 116 (12) :5115-5124
[10]   A polarizable force field for water using an artificial neural network [J].
Cho, KH ;
No, KT ;
Scheraga, HA .
JOURNAL OF MOLECULAR STRUCTURE, 2002, 641 (01) :77-91