Detection of lateral gene transfer among microbial genomes

被引:116
作者
Ragan, MA [1 ]
机构
[1] Univ Queensland, Inst Mol Biosci, Brisbane, Qld 4072, Australia
关键词
D O I
10.1016/S0959-437X(00)00244-6
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
An increasingly comprehensive assessment is being developed of the extent and potential significance of lateral gene transfer among microbial genomes. Genomic sequences can be identified as being of putatively lateral origin by their unexpected phyletic distribution, atypical sequence composition, differential presence or absence in closely related genomes, or incongruent phylogenetic trees. These complementary approaches sometimes yield inconsistent results. Not only more data but also quantitative models and simulations are needed urgently.
引用
收藏
页码:620 / 626
页数:7
相关论文
共 76 条
[1]   Apoptotic molecular machinery: Vastly increased complexity in vertebrates revealed by genome comparisons [J].
Aravind, L ;
Dixit, VM ;
Koonin, EV .
SCIENCE, 2001, 291 (5507) :1279-+
[2]  
BADGER JH, 1999, THESIS U ILLINOIS UR
[3]   Biodiversity and horizontal gene transfer in culturable bacteria isolated from activated sludge enriched in nonylphenol ethoxylates [J].
Barberio, C ;
Pagliai, L ;
Cavalieri, D ;
Fani, R .
RESEARCH IN MICROBIOLOGY, 2001, 152 (01) :105-112
[4]   Horizontal gene transfers in the environment: natural transformation as a putative process for gene transfers between transgenic plants and microorganisms [J].
Bertolla, F ;
Simonet, P .
RESEARCH IN MICROBIOLOGY, 1999, 150 (06) :375-384
[5]   The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways [J].
Boucher, Y ;
Doolittle, WF .
MOLECULAR MICROBIOLOGY, 2000, 37 (04) :703-716
[6]   Phylogenetic inferences from molecular sequences: Review and critique [J].
Brocchieri, L .
THEORETICAL POPULATION BIOLOGY, 2001, 59 (01) :27-40
[7]   Archaea and the prokaryote-to-eukaryote transition [J].
Brown, JR ;
Doolittle, WF .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 1997, 61 (04) :456-+
[8]   Lateral gene transfer in prokaryotes [J].
Campbell, AM .
THEORETICAL POPULATION BIOLOGY, 2000, 57 (02) :71-77
[9]   Horizontal gene transfer and the origin of species: lessons from bacteria [J].
de la Cruz, F ;
Davies, J .
TRENDS IN MICROBIOLOGY, 2000, 8 (03) :128-133
[10]   Evolutionary implications of the frequent horizontal transfer of mismatch repair genes [J].
Denamur, E ;
Lecointre, G ;
Darlu, P ;
Tenaillon, O ;
Acquaviva, C ;
Sayada, C ;
Sunjevaric, I ;
Rothstein, R ;
Elion, J ;
Taddei, F ;
Radman, M ;
Matic, I .
CELL, 2000, 103 (05) :711-721