Simulated annealing of chemical potential: A general procedure for locating bound waters. Application to the study of the differential hydration propensities of the major and minor grooves of DNA

被引:55
作者
Guarnieri, F
Mezei, M
机构
[1] Dept. of Physiology and Biophysics, Mount Sinai School of Medicine, New York
关键词
D O I
10.1021/ja961482a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
[No abstract available]
引用
收藏
页码:8493 / 8494
页数:2
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[1]   THE CRYSTAL-STRUCTURE OF THE TRIGONAL DECAMER C-G-A-T-C-G-(6ME)A-T-C-G - A B-DNA HELIX WITH 10.6 BASE-PAIRS PER TURN [J].
BAIKALOV, I ;
GRZESKOWIAK, K ;
YANAGI, K ;
QUINTANA, J ;
DICKERSON, RE .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 231 (03) :768-784
[2]   HYDRATION OF DNA - TAKE 2 [J].
BERMAN, HM .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1994, 4 (03) :345-350
[3]   MOLECULAR-DYNAMICS STUDIES OF DNA [J].
BEVERIDGE, DL ;
RAVISHANKER, G .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1994, 4 (02) :246-255
[4]   INTERACTION OF WATER WITH ORIENTED DNA IN THE A-FORM AND B-FORM CONFORMATIONS [J].
BRANDES, R ;
RUPPRECHT, A ;
KEARNS, DR .
BIOPHYSICAL JOURNAL, 1989, 56 (04) :683-691
[5]   HYDRATION OF PROTEINS - A COMPARISON OF EXPERIMENTAL RESIDENCE TIMES OF WATER-MOLECULES SOLVATING THE BOVINE PANCREATIC TRYPSIN-INHIBITOR WITH THEORETICAL-MODEL CALCULATIONS [J].
BRUNNE, RM ;
LIEPINSH, E ;
OTTING, G ;
WUTHRICH, K ;
VANGUNSTEREN, WF .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 231 (04) :1040-1048
[6]   MG2+ RECOGNIZES THE SEQUENCE OF DNA THROUGH ITS HYDRATION SHELL [J].
BUCKIN, VA ;
KANKIYA, BI ;
RENTZEPERIS, D ;
MARKY, LA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (21) :9423-9429
[7]   INFLUENCE OF BASE COMPOSITION, BASE SEQUENCE, AND DUPLEX STRUCTURE ON DNA HYDRATION - APPARENT MOLAR VOLUMES AND APPARENT MOLAR ADIABATIC COMPRESSIBILITIES OF SYNTHETIC AND NATURAL DNA DUPLEXES AT 25-DEGREES-C [J].
CHALIKIAN, TV ;
SARVAZYAN, AP ;
PLUM, GE ;
BRESLAUER, KJ .
BIOCHEMISTRY, 1994, 33 (09) :2394-2401
[8]   MOLECULAR-DYNAMICS SIMULATIONS ON SOLVATED BIOMOLECULAR SYSTEMS - THE PARTICLE MESH EWALD METHOD LEADS TO STABLE TRAJECTORIES OF DNA, RNA, AND PROTEINS [J].
CHEATHAM, TE ;
MILLER, JL ;
FOX, T ;
DARDEN, TA ;
KOLLMAN, PA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (14) :4193-4194
[9]   DYNAMICS OF THE INTERNAL AND EXTERNAL HYDRATION OF GLOBULAR-PROTEINS [J].
DENISOV, VP ;
HALLE, B .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (22) :10324-10325
[10]   STRUCTURE OF A B-DNA DODECAMER .2. INFLUENCE OF BASE SEQUENCE ON HELIX STRUCTURE [J].
DICKERSON, RE ;
DREW, HR .
JOURNAL OF MOLECULAR BIOLOGY, 1981, 149 (04) :761-786