Analysis of similarity between RNA secondary structures

被引:28
作者
Bai, FL [1 ]
Zhu, W
Wang, TM
机构
[1] Dalian Univ Technol, Dept Math Appl, Dalian 116024, Peoples R China
[2] Hunan Univ, Sch Comp & Commun, Changsha 410082, Hunan, Peoples R China
[3] Hainan Normal Univ, Dept Appl Math, Haikou 571158, Peoples R China
关键词
D O I
10.1016/j.cplett.2005.04.052
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 [物理化学]; 081704 [应用化学];
摘要
A graphical representation has been derived from random walk. The numerical characterization of the graphical representation is applied to compute the similarities of RNA secondary structures. The examination of similarities/dissimilarities among the secondary structure at the 3'-terminus belonging to different species illustrates the utility of the approach. (c) 2005 Elsevier B.V. All rights reserved.
引用
收藏
页码:258 / 263
页数:6
相关论文
共 35 条
[1]
THE NUCLEOTIDE-SEQUENCE OF APPLE MOSAIC-VIRUS COAT PROTEIN GENE HAS NO SIMILARITY WITH OTHER BROMOVIRIDAE COAT PROTEIN GENES [J].
ALREFAI, RH ;
SHIEL, PJ ;
DOMIER, LL ;
DARCY, CJ ;
BERGER, PH ;
KORBAN, SS .
JOURNAL OF GENERAL VIROLOGY, 1994, 75 :2847-2850
[2]
THE COMPLETE NUCLEOTIDE-SEQUENCE OF PRUNE DWARF ILARVIRUS RNA-3 - IMPLICATIONS FOR COAT PROTEIN-ACTIVATION OF GENOME REPLICATION IN ILARVIRUSES [J].
BACHMAN, EJ ;
SCOTT, SW ;
XIN, G ;
VANCE, VB .
VIROLOGY, 1994, 201 (01) :127-131
[3]
Bafna V, 1995, LECT NOTES COMPUT SC, V937, P1
[4]
COMPLETE NUCLEOTIDE-SEQUENCE OF TOBACCO STREAK VIRUS-RNA 3 [J].
CORNELISSEN, BJC ;
JANSSEN, H ;
ZUIDEMA, D ;
BOL, JF .
NUCLEIC ACIDS RESEARCH, 1984, 12 (05) :2427-2437
[5]
CORPET F, 1994, COMPUT APPL BIOSCI, V10, P389
[6]
SIMPLER DNA-SEQUENCE REPRESENTATIONS [J].
GATES, MA .
NATURE, 1985, 316 (6025) :219-219
[7]
HAMORI E, 1983, J BIOL CHEM, V258, P1318
[8]
NOVEL DNA-SEQUENCE REPRESENTATIONS [J].
HAMORI, E .
NATURE, 1985, 314 (6012) :585-585
[9]
NUCLEOTIDE-SEQUENCE AND STRUCTURAL DETERMINANTS OF SPECIFIC BINDING OF COAT PROTEIN OR COAT PROTEIN-PEPTIDES TO THE 3' UNTRANSLATED REGION OF ALFALFA MOSAIC-VIRUS RNA-4 [J].
HOUSERSCOTT, F ;
BAER, ML ;
LIEM, KF ;
CAI, JM ;
GEHRKE, L .
JOURNAL OF VIROLOGY, 1994, 68 (04) :2194-2205
[10]
NUCLEOTIDE-SEQUENCE OF THE 3'-NONCODING REGION OF ALFALFA MOSAIC-VIRUS RNA-4 AND ITS HOMOLOGY WITH THE GENOMIC RNAS [J].
KOPERZWARTHOFF, EC ;
BREDERODE, FT ;
WALSTRA, P ;
BOL, JF .
NUCLEIC ACIDS RESEARCH, 1979, 7 (07) :1887-1900