Diffusive escape and reentry through a channel in the cavity wall

被引:6
作者
Berezhkovskii, AM
Barzykin, A
机构
[1] Natl Inst AIST, PCRC, Tsukuba, Ibaraki 3058565, Japan
[2] NIH, Ctr Informat Technol, Bethesda, MD 20892 USA
关键词
D O I
10.1016/j.cplett.2003.10.128
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We show that the kinetics of diffusive escape from a cavity through a narrow channel in the cavity wall and successive reentry can be described by a formal kinetic scheme for reversible dissociation of a spherical binding site with appropriately defined effective association and dissociation rate constants. Initially the population of the cavity decays exponentially, with the rate constant determined by the cavity volume and the channel length and radius. A crossover to the universal inverse power law behavior, which does not depend on the channel geometry, occurs at long times. These simple predictions are in excellent agreement with the results of Brownian dynamics simulations. (C) 2003 Elsevier B.V. All rights reserved.
引用
收藏
页码:6 / 10
页数:5
相关论文
共 9 条
[1]   THEORY OF REVERSIBLE DIFFUSION-INFLUENCED REACTIONS [J].
AGMON, N ;
SZABO, A .
JOURNAL OF CHEMICAL PHYSICS, 1990, 92 (09) :5270-5284
[2]   Channel-facilitated membrane transport: Average lifetimes in the channel [J].
Berezhkovskii, AM ;
Pustovoit, MA ;
Bezrukov, SM .
JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (07) :3943-3951
[3]   Escape and reentry of a Brownian particle through a hole in a cavity [J].
Berezhkovskii, AM ;
Barzykin, AV .
JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (14) :6700-6701
[4]   Channel-facilitated membrane transport: Transit probability and interaction with the channel [J].
Berezhkovskii, AM ;
Pustovoit, MA ;
Bezrukov, SM .
JOURNAL OF CHEMICAL PHYSICS, 2002, 116 (22) :9952-9956
[5]   Particle number fluctuations in a membrane channel [J].
Bezrukov, SM ;
Berezhkovskii, AM ;
Pustovoit, MA ;
Szabo, A .
JOURNAL OF CHEMICAL PHYSICS, 2000, 113 (18) :8206-8211
[6]   Kinetics of escape through a small hole [J].
Grigoriev, IV ;
Makhnovskii, YA ;
Berezhkovskii, AM ;
Zitserman, VY .
JOURNAL OF CHEMICAL PHYSICS, 2002, 116 (22) :9574-9577
[7]   EFFECT OF ROTATION ON DIFFUSION-CONTROLLED RATE OF LIGAND-PROTEIN ASSOCIATION [J].
HILL, TL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1975, 72 (12) :4918-4922
[8]  
RICE SA, 1985, DIFFUSION LIMITED RE
[9]   A RATE-PROCESS WITH AN ENTROPY BARRIER [J].
ZHOU, HX ;
ZWANZIG, R .
JOURNAL OF CHEMICAL PHYSICS, 1991, 94 (09) :6147-6152