Activation-Induced Cytidine Deaminase Targets DNA at Sites of RNA Polymerase II Stalling by Interaction with Spt5

被引:290
作者
Pavri, Rushad [1 ]
Gazumyan, Anna [1 ,2 ]
Jankovic, Mila [1 ]
Di Virgilio, Michela [1 ]
Klein, Isaac [1 ]
Ansarah-Sobrinho, Camilo [3 ]
Resch, Wolfgang [3 ]
Yamane, Arito [3 ]
San-Martin, Bernardo Reina [1 ,4 ]
Barreto, Vasco [1 ,5 ]
Nieland, Thomas J. [6 ]
Root, David E.
Casellas, Rafael [3 ]
Nussenzweig, Michel C. [1 ,2 ]
机构
[1] Rockefeller Univ, Lab Mol Immunol, New York, NY 10065 USA
[2] Rockefeller Univ, Howard Hughes Med Inst, New York, NY 10065 USA
[3] NCI, Natl Inst Arthrit & Musculoskeletal & Skin Dis NI, Ctr Canc Res, Bethesda, MD 20892 USA
[4] Univ Strasbourg, INSERM U964, CNRS UMR7104, IGBMC, F-67404 Illkirch Graffenstaden, France
[5] Inst Gulbenkian Ciencias, Lab Epigenet Soma, P-2780156 Oeiras, Portugal
[6] MIT, Broad Inst, RNAi Platform, Cambridge, MA 02142 USA
关键词
CLASS-SWITCH RECOMBINATION; SINGLE-STRANDED-DNA; TRANSCRIPTION ELONGATION-FACTOR; ANTIBODY DIVERSIFICATION ENZYME; PROTEIN-KINASE-A; CENTER B-CELLS; SOMATIC HYPERMUTATION; C-MYC; IMMUNOGLOBULIN GENES; P-TEFB;
D O I
10.1016/j.cell.2010.09.017
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Activation-induced cytidine deaminase (AID) initiates antibody gene diversification by creating U:G mismatches. However, AID is not specific for antibody genes; Off-target lesions can activate oncogenes or cause chromosome translocations. Despite its importance in these transactions little is known about how AID finds its targets. We performed an shRNA screen to identify factors required for class switch recombination (CSR) of antibody loci. We found that Spt5, a factor associated with stalled RNA polymerase II (Pol II) and single stranded DNA (ssDNA), is required for CSR. Spt5 interacts with AID, it facilitates association between AID and Pol II, and AID recruitment to its Ig and non-Ig targets. ChIP-seq experiments reveal that Spt5 colocalizes with AID and stalled Pol II. Further, Spt5 accumulation at sites of Pol II stalling is predictive of AID-induced mutation. We propose that AID is targeted to sites of Pol II stalling in part via its association with Spt5.
引用
收藏
页码:122 / 133
页数:12
相关论文
共 87 条
[1]   Interplay between E-box and NF-κB in regulation of A20 gene by DRB sensitivity-inducing factor (DSIF) [J].
Amir-Zilberstein, Liat ;
Dikstein, Rivka .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2008, 283 (03) :1317-1323
[2]   The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila [J].
Andrulis, ED ;
Werner, J ;
Nazarian, A ;
Erdjument-Bromage, H ;
Tempst, P ;
Lis, JT .
NATURE, 2002, 420 (6917) :837-841
[3]   TIF1γ Controls Erythroid Cell Fate by Regulating Transcription Elongation [J].
Bai, Xiaoying ;
Kim, Jonghwan ;
Yang, Zhongan ;
Jurynec, Michael J. ;
Akie, Thomas E. ;
Lee, Joseph ;
LeBlanc, Jocelyn ;
Sessa, Anna ;
Jiang, Hong ;
DiBiase, Anthony ;
Zhou, Yi ;
Grunwald, David J. ;
Lin, Shuo ;
Cantor, Alan B. ;
Orkin, Stuart H. ;
Zon, Leonard I. .
CELL, 2010, 142 (01) :133-143
[4]   The AID antibody diversification enzyme is regulated by protein kinase A phosphorylation [J].
Basu, U ;
Chaudhuri, J ;
Alpert, C ;
Dutt, S ;
Ranganath, S ;
Li, G ;
Schrum, JP ;
Manis, JP ;
Alt, FW .
NATURE, 2005, 438 (7067) :508-511
[5]   A BLOCK TO ELONGATION IS LARGELY RESPONSIBLE FOR DECREASED TRANSCRIPTION OF C-MYC IN DIFFERENTIATED HL60 CELLS [J].
BENTLEY, DL ;
GROUDINE, M .
NATURE, 1986, 321 (6071) :702-706
[6]   Reprogramming towards pluripotency requires AID-dependent DNA demethylation [J].
Bhutani, Nidhi ;
Brady, Jennifer J. ;
Damian, Mara ;
Sacco, Alessandra ;
Corbel, Stephane Y. ;
Blau, Helen M. .
NATURE, 2010, 463 (7284) :1042-U57
[7]   Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase [J].
Bransteitter, R ;
Pham, P ;
Scharff, MD ;
Goodman, MF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (07) :4102-4107
[8]   Replication protein A interacts with AID to promote deamination of somatic hypermutation targets [J].
Chaudhuri, J ;
Khuong, C ;
Alt, FW .
NATURE, 2004, 430 (7003) :992-998
[9]   Transcription-targeted DNA deamination by the AID antibody diversification enzyme [J].
Chaudhuri, J ;
Tian, M ;
Khuong, C ;
Chua, K ;
Pinaud, E ;
Alt, FW .
NATURE, 2003, 422 (6933) :726-730
[10]   Class-switch recombination: Interplay of transcription, DNA deamination and DNA repair [J].
Chaudhuri, J ;
Alt, FW .
NATURE REVIEWS IMMUNOLOGY, 2004, 4 (07) :541-552