MIREOT: The minimum information to reference an external ontology term

被引:78
作者
Courtot, Melanie [1 ,2 ]
Gibson, Frank [3 ]
Lister, Allyson L. [4 ,5 ]
Malone, James [6 ]
Schober, Daniel [7 ]
Brinkman, Ryan R. [1 ,2 ]
Ruttenberg, Alan [8 ]
机构
[1] Univ British Columbia, BC Canc Agcy, Vancouver, BC V5Z 1M9, Canada
[2] Univ British Columbia, Dept Med Genet, Vancouver, BC, Canada
[3] Royal Pharmaceut Soc, London SE1 7JN, England
[4] Newcastle Univ, CISBAN, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England
[5] Newcastle Univ, Sch Comp Sci, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England
[6] European Bioinformat Inst, Cambridge CB10 1SD, England
[7] Univ Med Ctr, Inst Med Biometry & Med Informat, D-70104 Freiburg, Germany
[8] Sci Commons, Cambridge, MA USA
基金
英国生物技术与生命科学研究理事会; 加拿大健康研究院;
关键词
Ontology import; data integration; MIREOT; DATABASE; OWL;
D O I
10.3233/AO-2011-0087
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. Current editing tools present challenges for working with large ontologies and direct OWL imports can prove impractical for day-to-day development. Furthermore, external ontologies often undergo continuous change which can introduce conflicts when integrated with multiple efforts. Finally, importing heterogeneous ontologies in their entirety may lead to inconsistencies or unintended inferences. In this paper we propose a set of guidelines for importing required terms from an external resource into a target ontology. We describe the methodology, its implementation, present some examples of this application, and outline future work and extensions.
引用
收藏
页码:23 / 33
页数:11
相关论文
共 27 条
  • [1] [Anonymous], PHENOTYPIC QUALITY O
  • [2] [Anonymous], 2008, COMPUT BIOL SER, DOI 10.1007/978-1-84628-885-2_16
  • [3] [Anonymous], The Information Artifact Ontology (IAO)
  • [4] [Anonymous], 2008, SPARQL QUERY LANGUAG
  • [5] An ontology for cell types
    Bard, J
    Rhee, SY
    Ashburner, M
    [J]. GENOME BIOLOGY, 2005, 6 (02)
  • [6] ChEBI:: a database and ontology for chemical entities of biological interest
    Degtyarenko, Kirill
    de Matos, Paula
    Ennis, Marcus
    Hastings, Janna
    Zbinden, Martin
    McNaught, Alan
    Alcantara, Rafael
    Darsow, Michael
    Guedj, Mickael
    Ashburner, Michael
    [J]. NUCLEIC ACIDS RESEARCH, 2008, 36 : D344 - D350
  • [7] The foundational model of anatomy in OWL: Experience and perspectives
    Golbreich, Christine
    Zhang, Songmao
    Bodenreider, Olivier
    [J]. JOURNAL OF WEB SEMANTICS, 2006, 4 (03): : 181 - 195
  • [8] Grau BC, 2007, P 16 INT WORLD WID W
  • [9] GRAU BC, 2007, P 3 OWL EXP DIR WORK
  • [10] GRAU BC, 2007, P 2007 DESCR LOG WOR