Construction of a river buffalo (Bubalus bubalis) whole-genome radiation hybrid panel and preliminary RH mapping of chromosomes 3 and 10

被引：26

作者：

Amaral, M. E. J. ^{[1
]}

Owens, K. E.

Elliott, J. S.

Fickey, C.

Schaeffer, A. A.

Agarwala, R.

Womack, J. E.

机构：

[1] Sao Paulo State Univ, Dept Biol, IBILCE, UNESP, BR-15054000 Sao Jose Rio Presto, SP, Brazil

[2] Texas A&M Univ, Dept Vet Pathobiol, College Stn, TX 77843 USA

[3] Natl Ctr Biotechnol Informat, NIH, Dept Hlth & Human Serv, Bethesda, MD 20984 USA

来源：

ANIMAL GENETICS | 2007年 / 38卷 / 03期

关键词：

gene mapping; radiation hybrid panel; river buffalo; whole genome;

D O I：

10.1111/j.1365-2052.2007.01587.x

中图分类号：

S8 [畜牧、动物医学、狩猎、蚕、蜂];

学科分类号：

0905 ;

摘要：

The buffalo (Bubalus bubalis) is a source of milk and meat, and also serves as a draft animal. In this study, a 5000-rad whole-genome radiation hybrid (RH) panel for river buffalo was constructed and used to build preliminary RH maps for BBU3 and BBU10 chromosomes. The preliminary maps contain 66 markers, including coding genes, cattle expressed sequence tags (ESTs) and microsatellite loci. The RH maps presented here are the starting point for mapping additional loci that will allow detailed comparative maps between buffalo, cattle and other species whose genomes may be mapped in the future. A large quantity of DNA has been prepared from the cell lines forming the river buffalo RH panel and will be made publicly available to the international community both for the study of chromosome evolution and for the improvement of traits important to the role of buffalo in animal agriculture.

引用

页码：311 / 314

页数：4

共 12 条

[1] A fast and scalable radiation hybrid map construction and integration strategy [J].

Agarwala, R ;

Applegate, DL ;

Maglott, D ;

Schuler, GD ;

Schäffer, AA .

GENOME RESEARCH, 2000, 10 (03) :350-364

[2]

Applegate D., 1998, DOC MATH J DTSCH MAT, P645

[3] A high-resolution physical map of equine homologs of HSA19 shows divergent evolution compared with other mammals [J].

Brinkmeyer-Langford, C ;

Raudsepp, T ;

Lee, EJ ;

Goh, G ;

Schäffer, AA ;

Agarwala, R ;

Wagner, ML ;

Tozaki, T ;

Skow, LC ;

Womack, JE ;

Mickelson, JR ;

Chowdhary, BP .

MAMMALIAN GENOME, 2005, 16 (08) :631-649

[4] Construction of a 5000rad whole-genome radiation hybrid panel in the horse and generation of a comprehensive and comparative map for ECA11 [J].

Chowdhary, BP ;

Raudsepp, T ;

Honeycutt, D ;

Owens, EK ;

Piumi, F ;

Guérin, G ;

Matise, TC ;

Kata, SR ;

Womack, JE ;

Skow, LC .

MAMMALIAN GENOME, 2002, 13 (02) :89-94

[5]

EL Nahas SM, 1999, J ANIM BREED GENET, V116, P21, DOI 10.1111/j.1439-0388.1999.00167.x

[6] A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution [J].

Everts-van der Wind, A ;

Larkin, DM ;

Green, CA ;

Elliott, JS ;

Olmstead, CA ;

Chiu, R ;

Schein, JE ;

Marra, MA ;

Womack, JE ;

Lewin, HA .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (51) :18526-18531

[7] A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates [J].

Everts-van der Wind, A ;

Kata, SR ;

Band, MR ;

Rebeiz, M ;

Larkin, DM ;

Everts, RE ;

Green, CA ;

Liu, L ;

Natarajan, S ;

Goldammer, T ;

Lee, JH ;

McKay, S ;

Womack, JE ;

Lewin, HA .

GENOME RESEARCH, 2004, 14 (07) :1424-1437

[8] A first-generation porcine whole-genome radiation hybrid map [J].

Hawken, RJ ;

Murtaugh, J ;

Flickinger, GH ;

Yerle, M ;

Robic, A ;

Milan, D ;

Gellin, J ;

Beattie, CW ;

Schook, LB ;

Alexander, LJ .

MAMMALIAN GENOME, 1999, 10 (08) :824-830

[9] The river buffalo (Bubalus bubalis, 2n=50) cytogenetic map:: assignment of 64 loci by fluorescence in situ hybridization and R-banding [J].

Iannuzzi, L ;

Di Meo, GP ;

Perucatti, A ;

Schibler, L ;

Incarnato, D ;

Gallagher, D ;

Eggen, A ;

Ferretti, L ;

Cribiu, EP ;

Womack, J .

CYTOGENETIC AND GENOME RESEARCH, 2003, 102 (1-4) :65-75

[10] A comprehensive genetic map of the cattle genome based on 3802 microsatellites [J].

Ihara, N ;

Takasuga, A ;

Mizoshita, K ;

Takeda, H ;

Sugimoto, M ;

Mizoguchi, Y ;

Hirano, T ;

Itoh, T ;

Watanabe, T ;

Reed, KM ;

Snelling, WM ;

Kappes, SM ;

Beattie, CW ;

Bennett, GL ;

Sugimoto, Y .

GENOME RESEARCH, 2004, 14 (10A) :1987-1998

← 1 2 →