Template DNA ratio can affect detection by genus-specific PCR-Denaturing gradient gel electrophoresis of bacteria present at low abundance in mixed populations

被引:8
作者
Zhang, L
Danon, S
Grehan, M
Lee, A
Mitchell, H [1 ]
机构
[1] Univ New S Wales, Sch Biotechnol & Biomol Sci, Sydney, NSW, Australia
[2] CSIRO, Div Mol Sci, Sydney, NSW, Australia
关键词
Helicobacter species; DGGE; 16S rRNA;
D O I
10.1111/j.1523-5378.2005.00294.x
中图分类号
R57 [消化系及腹部疾病];
学科分类号
摘要
The detection of Helicobacter species by genus-specific polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) was compared with that by species-specific PCR in murine intestinal samples. Results suggest that, in samples containing multiple Helicobacter species, genus-specific PCR-DGGE may fail to detect all Helicobacter species present and that this relates to the initial template DNA ratio.
引用
收藏
页码:80 / 82
页数:3
相关论文
共 7 条
[1]   EVALUATION OF ANTIBIOTIC THERAPIES FOR ERADICATION OF HELICOBACTER-HEPATICUS [J].
FOLTZ, CJ ;
FOX, JG ;
YAN, L ;
SHAMES, B .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 1995, 39 (06) :1292-1294
[2]   Detection of Helicobacter colonization of the murine lower bowel by genus-specific PCR-denaturing gradient gel electrophoresis [J].
Grehan, M ;
Tamotia, G ;
Robertson, B ;
Mitchell, H .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (10) :5164-5166
[3]   Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA [J].
Heilig, HGHJ ;
Zoetendal, EG ;
Vaughan, EE ;
Marteau, P ;
Akkermans, ADL ;
de Vos, WM .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (01) :114-123
[4]   PROFILING OF COMPLEX MICROBIAL-POPULATIONS BY DENATURING GRADIENT GEL-ELECTROPHORESIS ANALYSIS OF POLYMERASE CHAIN REACTION-AMPLIFIED GENES-CODING FOR 16S RIBOSOMAL-RNA [J].
MUYZER, G ;
DEWAAL, EC ;
UITTERLINDEN, AG .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1993, 59 (03) :695-700
[5]   Helicobacter ganmani sp nov., a urease-negative anaerobe isolated from the intestines of laboratory mice [J].
Robertson, BR ;
O'Rourke, JL ;
Vandamme, P ;
On, SLW ;
Lee, A .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 :1881-1889
[6]   Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis [J].
Satokari, RM ;
Vaughan, EE ;
Akkermans, ADL ;
Saarela, M ;
de Vos, WM .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (02) :504-513
[7]   DNA isolation Protocols affect the detection limit of PCR approaches of bacteria in samples from the human gastrointestinal tract [J].
Zoetendal, EG ;
Ben-Amor, K ;
Akkermans, ADL ;
Abee, T ;
de Vos, WM .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2001, 24 (03) :405-410