Real-Time SNP Analysis in Secondary-Structure-Folded Nucleic Acids

被引:47
作者
Grimes, Jeffrey [1 ]
Gerasimova, Yulia V. [1 ]
Kolpashchikov, Dmitry M. [1 ]
机构
[1] Univ Cent Florida, Dept Chem, Orlando, FL 32816 USA
关键词
biotransformations; genotyping; molecular beacons; real-time detection; tau proteins; SINGLE NUCLEOTIDE POLYMORPHISMS; MOLECULAR BEACONS; PNA HYBRIDIZATION; ENERGY-TRANSFER; HUMAN GENOME; DNA; PROBES; SEQUENCES; RNA; DEOXYRIBOZYME;
D O I
10.1002/anie.201004475
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A tricomponent sensor was designed for genotyping stem-loop-structured DNA sequences. DNA adaptor strand f (see picture; red) hybridizes to the analyte (orange) with high affinity and unwinds its secondary structure; strand m (green) forms a stable complex only with the fully complementary analyte sequence. A fluorescing molecular beacon reports complex formation. © 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
引用
收藏
页码:8950 / 8953
页数:4
相关论文
共 40 条
[1]   A haplotype map of the human genome [J].
Altshuler, D ;
Brooks, LD ;
Chakravarti, A ;
Collins, FS ;
Daly, MJ ;
Donnelly, P ;
Gibbs, RA ;
Belmont, JW ;
Boudreau, A ;
Leal, SM ;
Hardenbol, P ;
Pasternak, S ;
Wheeler, DA ;
Willis, TD ;
Yu, FL ;
Yang, HM ;
Zeng, CQ ;
Gao, Y ;
Hu, HR ;
Hu, WT ;
Li, CH ;
Lin, W ;
Liu, SQ ;
Pan, H ;
Tang, XL ;
Wang, J ;
Wang, W ;
Yu, J ;
Zhang, B ;
Zhang, QR ;
Zhao, HB ;
Zhao, H ;
Zhou, J ;
Gabriel, SB ;
Barry, R ;
Blumenstiel, B ;
Camargo, A ;
Defelice, M ;
Faggart, M ;
Goyette, M ;
Gupta, S ;
Moore, J ;
Nguyen, H ;
Onofrio, RC ;
Parkin, M ;
Roy, J ;
Stahl, E ;
Winchester, E ;
Ziaugra, L ;
Shen, Y .
NATURE, 2005, 437 (7063) :1299-1320
[2]   Integrating common and rare genetic variation in diverse human populations [J].
Altshuler, David M. ;
Gibbs, Richard A. ;
Peltonen, Leena ;
Dermitzakis, Emmanouil ;
Schaffner, Stephen F. ;
Yu, Fuli ;
Bonnen, Penelope E. ;
de Bakker, Paul I. W. ;
Deloukas, Panos ;
Gabriel, Stacey B. ;
Gwilliam, Rhian ;
Hunt, Sarah ;
Inouye, Michael ;
Jia, Xiaoming ;
Palotie, Aarno ;
Parkin, Melissa ;
Whittaker, Pamela ;
Chang, Kyle ;
Hawes, Alicia ;
Lewis, Lora R. ;
Ren, Yanru ;
Wheeler, David ;
Muzny, Donna Marie ;
Barnes, Chris ;
Darvishi, Katayoon ;
Hurles, Matthew ;
Korn, Joshua M. ;
Kristiansson, Kati ;
Lee, Charles ;
McCarroll, Steven A. ;
Nemesh, James ;
Keinan, Alon ;
Montgomery, Stephen B. ;
Pollack, Samuela ;
Price, Alkes L. ;
Soranzo, Nicole ;
Gonzaga-Jauregui, Claudia ;
Anttila, Verneri ;
Brodeur, Wendy ;
Daly, Mark J. ;
Leslie, Stephen ;
McVean, Gil ;
Moutsianas, Loukas ;
Nguyen, Huy ;
Zhang, Qingrun ;
Ghori, Mohammed J. R. ;
McGinnis, Ralph ;
McLaren, William ;
Takeuchi, Fumihiko ;
Grossman, Sharon R. .
NATURE, 2010, 467 (7311) :52-58
[3]   The impact of nucleic acid secondary structure on PNA hybridization [J].
Armitage, BA .
DRUG DISCOVERY TODAY, 2003, 8 (05) :222-228
[4]   Array-based DNA diagnostics: Let the revolution begin [J].
Beaudet, Arthur L. ;
Belmont, John W. .
ANNUAL REVIEW OF MEDICINE, 2008, 59 :113-129
[5]   Target-assembled tandem oligonucleotide systems based on exciplexes for detecting DNA mismatches and single nucleotide polymorphisms [J].
Bichenkova, EV ;
Savage, HE ;
Sardarian, AR ;
Douglas, KT .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2005, 332 (04) :956-964
[6]   Forensically relevant SNP classes [J].
Budowle, Bruce ;
van Daal, Angela .
BIOTECHNIQUES, 2008, 44 (05) :603-+
[7]   DETECTION OF NUCLEIC-ACID HYBRIDIZATION BY NONRADIATIVE FLUORESCENCE RESONANCE ENERGY-TRANSFER [J].
CARDULLO, RA ;
AGRAWAL, S ;
FLORES, C ;
ZAMECNIK, PC ;
WOLF, DE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (23) :8790-8794
[8]  
EBATA K, 1995, PHOTOCHEM PHOTOBIOL, V62, P836
[9]   The structure of haplotype blocks in the human genome [J].
Gabriel, SB ;
Schaffner, SF ;
Nguyen, H ;
Moore, JM ;
Roy, J ;
Blumenstiel, B ;
Higgins, J ;
DeFelice, M ;
Lochner, A ;
Faggart, M ;
Liu-Cordero, SN ;
Rotimi, C ;
Adeyemo, A ;
Cooper, R ;
Ward, R ;
Lander, ES ;
Daly, MJ ;
Altshuler, D .
SCIENCE, 2002, 296 (5576) :2225-2229
[10]   A Single Molecular Beacon Probe Is Sufficient for the Analysis of Multiple Nucleic Acid Sequences [J].
Gerasimova, Yulia V. ;
Hayson, Aaron ;
Ballantyne, Jack ;
Kolpashchikov, Dmitry M. .
CHEMBIOCHEM, 2010, 11 (12) :1762-1768