Probing structure in invisible protein states with anisotropic NMR chemical shifts

被引:47
作者
Vallurupalli, Pramodh
Hansen, D. Flemming
Kay, Lewis E.
机构
[1] Univ Toronto, Dept Mol Genet, Toronto, ON M5S 1A8, Canada
[2] Univ Toronto, Dept Biochem, Toronto, ON M5S 1A8, Canada
[3] Univ Toronto, Dept Chem, Toronto, ON M5S 1A8, Canada
关键词
D O I
10.1021/ja710817g
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A general method for obtaining quantitative structural information on invisible, excited protein states by solution-based NMR spectroscopy is presented. The approach exploits relaxation dispersion techniques in which changes in chemical shift between ground and excited states are monitored in solutions with and without small amounts of residual molecular alignment. This allows the calculation of differences in chemical shifts induced by alignment that can be directly related to molecular structure, in cases where the orientation and magnitude of the chemical-shift tensor are well defined. An example using carbonyl chemical shifts as probes of a protein-ligand binding reaction is presented to illustrate and validate the method.
引用
收藏
页码:2734 / +
页数:3
相关论文
共 16 条
[1]   Weak alignment offers new NMR opportunities to study protein structure and dynamics [J].
Bax, A .
PROTEIN SCIENCE, 2003, 12 (01) :1-16
[2]   The dynamic energy landscape of dihydrofolate reductase catalysis [J].
Boehr, David D. ;
McElheny, Dan ;
Dyson, H. Jane ;
Wright, Peter E. .
SCIENCE, 2006, 313 (5793) :1638-1642
[3]   Protein structure determination from NMR chemical shifts [J].
Cavalli, Andrea ;
Salvatella, Xavier ;
Dobson, Christopher M. ;
Vendruscolo, Michele .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (23) :9615-9620
[4]   Measurement of proton, nitrogen, and carbonyl chemical shielding anisotropies in a protein dissolved in a dilute liquid crystalline phase [J].
Cornilescu, G ;
Bax, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (41) :10143-10154
[5]   Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase [J].
Cornilescu, G ;
Marquardt, JL ;
Ottiger, M ;
Bax, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (27) :6836-6837
[6]   Characterization of chemical exchange using residual dipolar coupling [J].
Igumenova, Tatyana I. ;
Brath, Ulrika ;
Akke, Mikael ;
Palmer, Arthur G., III .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (44) :13396-+
[7]   Molecular dynamics and protein function [J].
Karplus, M ;
Kuriyan, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (19) :6679-6685
[8]   Enzyme dynamics during catalysis measured by NMR spectroscopy [J].
Kern, D ;
Eisenmesser, EZ ;
Wolf-Watz, M .
NUCLEAR MAGNETIC RESONANCE OF BIOLOGICAL MACROMOLECULES, PART C, 2005, 394 :507-524
[9]   Carbonyl CSA restraints from solution NMR for protein structure refinement [J].
Lipsitz, RS ;
Tjandra, N .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (44) :11065-11066
[10]   Review - New tools provide new insights in NMR studies of protein dynamics [J].
Mittermaier, A ;
Kay, LE .
SCIENCE, 2006, 312 (5771) :224-228