The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants

被引：1414

作者：

Rensing, Stefan A. ^{[2
]}

Lang, Daniel ^{[2
]}

Zimmer, Andreas D. ^{[2
]}

Terry, Astrid ^{[3
,4
]}

Salamov, Asaf ^{[5
]}

Shapiro, Harris ^{[5
]}

Nishiyama, Tomoaki ^{[6
]}

Perroud, Pierre-Francois ^{[1
]}

Lindquist, Erika A. ^{[5
]}

Kamisugi, Yasuko ^{[7
]}

Tanahashi, Takako ^{[8
,9
]}

Sakakibara, Keiko ^{[10
]}

Fujita, Tomomichi ^{[11
]}

Oishi, Kazuko ^{[12
]}

Shin-I, Tadasu ^{[12
]}

Kuroki, Yoko ^{[13
]}

Toyoda, Atsushi ^{[13
]}

Suzuki, Yutaka ^{[14
]}

Hashimoto, Shin-ichi ^{[15
]}

Yamaguchi, Kazuo ^{[6
,16
]}

Sugano, Sumio ^{[14
]}

Kohara, Yuji ^{[12
,17
]}

Fujiyama, Asao ^{[13
,18
,19
]}

Anterola, Aldwin ^{[20
]}

Aoki, Setsuyuki ^{[21
]}

Ashton, Neil ^{[22
]}

Barbazuk, W. Brad ^{[23
]}

Barker, Elizabeth ^{[22
]}

Bennetzen, Jeffrey L. ^{[24
]}

Blankenship, Robert ^{[1
]}

Cho, Sung Hyun ^{[1
]}

Dutcher, Susan K. ^{[25
]}

Estelle, Mark ^{[26
]}

Fawcett, Jeffrey A. ^{[27
]}

Gundlach, Heidrun ^{[28
]}

Hanada, Kousuke ^{[29
,30
]}

Heyl, Alexander ^{[31
]}

Hicks, Karen A. ^{[32
,33
]}

Hughes, Jon ^{[34
]}

Lohr, Martin ^{[35
]}

Mayer, Klaus ^{[28
]}

Melkozernov, Alexander ^{[36
]}

Murata, Takashi ^{[8
,9
]}

Nelson, David R. ^{[37
]}

Pils, Birgit ^{[38
]}

Prigge, Michael ^{[26
]}

Reiss, Bernd ^{[32
]}

Renner, Tanya ^{[39
]}

Rombauts, Stephane ^{[27
]}

Rushton, Paul J. ^{[40
]}

机构：

[1] Washington Univ, Dept Biol, St Louis, MO 63130 USA

[2] Univ Freiburg, Fac Biol, D-79104 Freiburg, Germany

[3] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

[4] Lawrence Livermore Natl Lab, Walnut Creek, CA 94598 USA

[5] Lawrence Berkeley Lab, Walnut Creek, CA 94598 USA

[6] Kanazawa Univ, Adv Sci Res Ctr, Kanazawa, Ishikawa 9200934, Japan

[7] Univ Leeds, Ctr Plant Sci, Leeds LS2 9JT, W Yorkshire, England

[8] Natl Inst Basic Biol, Okazaki, Aichi 4448585, Japan

[9] Grad Univ Adv Studies, Sch Life Sci, Dept Basic Biol, Okazaki, Aichi 4448585, Japan

[10] Monash Univ, Sch Biol Sci, Melbourne, Vic 3800, Australia

[11] Hokkaido Univ, Fac Sci, Dept Biol Sci, Sapporo, Hokkaido 0600810, Japan

[12] Natl Inst Genet, Ctr Genet Resource Informat, Genome Biol Lab, Mishima, Shizuoka 4118540, Japan

[13] RIKEN, Genom Sci Ctr, Kanagawa 2300045, Japan

[14] Univ Tokyo, Grad Sch Frontier Sci, Dept Med Genome Sci, Lab Funct Genom, Tokyo 1088639, Japan

[15] Univ Tokyo, Sch Med, Dept Mol Prevent Med, Tokyo 1138654, Japan

[16] Kanazawa Univ, Grad Sch Nat Sci & Technol, Div Life Sci, Kanazawa, Ishikawa 9201192, Japan

[17] Grad Univ Adv Studies, Sch Life Sci, Dept Genet, Mishima, Shizuoka 4118540, Japan

[18] Natl Inst Informat, Tokyo 1018403, Japan

[19] Grad Univ Adv Studies, Sch Multidisciplinary Sci, Dept Informat, Tokyo 1018403, Japan

[20] So Illinois Univ, Dept Plant Biol, Carbondale, IL 62901 USA

[21] Nagoya Univ, Grad Sch Informat Sci, Life Sci Informat Unit, Chikusa Ku, Nagoya, Aichi 4648601, Japan

[22] Univ Regina, Regina, SK S4S 0A2, Canada

[23] Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA

[24] Univ Georgia, Dept Genet, Davison Life Sci Complex, Athens, GA 30602 USA

[25] Washington Univ, Dept Genet, St Louis, MO 63108 USA

[26] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA

[27] Univ Ghent VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium

[28] GSF Res Ctr Environm & Hlth, MIPS IBI Inst Bioinformat, D-85764 Neuherberg, Germany

[29] Michigan State Univ, Dept Plant Biol, E Lansing, MI 48824 USA

[30] RIKEN, Plant Sci Ctr, Kanagawa 2300045, Japan

[31] Free Univ Berlin, Inst Biol, Appl Genet Neubau, D-14195 Berlin, Germany

[32] Max Planck Inst Plant Breeding Res, D-50829 Cologne, Germany

[33] Kenyon Coll, Dept Biol, Gambier, OH 43022 USA

[34] Univ Giessen, D-35390 Giessen, Germany

[35] Johannes Gutenberg Univ Mainz, Inst Gen Bot, D-55099 Mainz, Germany

[36] Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

[37] Univ Tennessee, Memphis, TN 38163 USA

[38] Univ Wurzburg, Biozentrum, Dept Bioinformat, D-97074 Wurzburg, Germany

[39] San Diego State Univ, Dept Biol, San Diego, CA 92182 USA

[40] Univ Virginia, Dept Biol, Charlottesville, VA 22903 USA

[41] Univ Minnesota, Dept Plant Biol, Biol Sci Ctr 250, St Paul, MN 55108 USA

[42] Rothamsted Res, Dept Biol Chem, Harpenden AL5 2JQ, Herts, England

[43] Rothamsted Res, Biomath & Bioinformat Dept, Harpenden AL5 2JQ, Herts, England

[44] Japan Sci & Technol Agcy, ERATO, Okazaki, Aichi 4448585, Japan

[45] Univ Calif Berkeley, Dept Integrat Biol, Berkeley, CA 94720 USA

[46] Genome Project Solut, Hercules, CA 94547 USA

来源：

SCIENCE | 2008年 / 319卷 / 5859期

基金：

英国生物技术与生命科学研究理事会; 美国国家科学基金会;

关键词：

D O I：

10.1126/science.1150646

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

We report the draft genome sequence of the model moss Physcomitrella patens and compare its features with those of flowering plants, from which it is separated by more than 400 million years, and unicellular aquatic algae. This comparison reveals genomic changes concomitant with the evolutionary movement to land, including a general increase in gene family complexity; loss of genes associated with aquatic environments ( e. g., flagellar arms); acquisition of genes for tolerating terrestrial stresses ( e. g., variation in temperature and water availability); and the development of the auxin and abscisic acid signaling pathways for coordinating multicellular growth and dehydration response. The Physcomitrella genome provides a resource for phylogenetic inferences about gene function and for experimental analysis of plant processes through this plant's unique facility for reverse genetics.

引用

页码：64 / 69

页数：6

共 35 条

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