Identity-by-descent filtering of exome sequence data identifies PIGV mutations in hyperphosphatasia mental retardation syndrome

被引:222
作者
Krawitz, Peter M. [1 ,2 ,3 ]
Schweiger, Michal R. [1 ,2 ]
Roedelsperger, Christian [1 ,3 ]
Marcelis, Carlo [4 ]
Koelsch, Uwe [5 ]
Meisel, Christian [5 ]
Stephani, Friederike [4 ]
Kinoshita, Taroh [6 ]
Murakami, Yoshiko [6 ]
Bauer, Sebastian [2 ]
Isau, Melanie [1 ]
Fischer, Axel [1 ]
Dahl, Andreas [1 ]
Kerick, Martin [1 ]
Hecht, Jochen [1 ,3 ]
Koehler, Sebastian [2 ]
Jaeger, Marten [2 ]
Gruenhagen, Johannes [2 ]
de Condor, Birgit Jonske [2 ]
Doelken, Sandra [2 ]
Brunner, Han G. [4 ]
Meinecke, Peter [7 ]
Passarge, Eberhard [8 ]
Thompson, Miles D. [9 ]
Cole, David E. [9 ]
Horn, Denise [2 ]
Roscioli, Tony [4 ,10 ]
Mundlos, Stefan [1 ,2 ,3 ]
Robinson, Peter N. [1 ,2 ,3 ]
机构
[1] Max Planck Inst Mol Genet, Berlin, Germany
[2] Charite Univ Med Berlin, Inst Med Genet, Berlin, Germany
[3] Charite Univ Med Berlin, Berlin Brandenburg Ctr Regenerat Therapies BCRI, Berlin, Germany
[4] Radboud Univ Nijmegen Med Ctr, Dept Human Genet, Nijmegen, Netherlands
[5] Charite Univ Med Berlin, Inst Med Immunol, Berlin, Germany
[6] Osaka Univ, Microbial Dis Res Inst, Dept Immunoregulat, Osaka, Japan
[7] Altonaer Kinderkrankenhaus, Hamburg, Germany
[8] Univ Klinikum Essen, Inst Humangenet, Essen, Germany
[9] Univ Toronto, Dept Lab Med & Pathol, Toronto, ON, Canada
[10] Univ Sydney, Dept Mol & Clin Genet, Sydney, NSW 2006, Australia
基金
英国医学研究理事会; 加拿大健康研究院;
关键词
GLYCOSYLPHOSPHATIDYLINOSITOL; DEFICIENCY; ANOMALIES; SEIZURES;
D O I
10.1038/ng.653
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Hyperphosphatasia mental retardation (HPMR) syndrome is an autosomal recessive form of mental retardation with distinct facial features and elevated serum alkaline phosphatase. We performed whole-exome sequencing in three siblings of a nonconsanguineous union with HPMR and performed computational inference of regions identical by descent in all siblings to establish PIGV, encoding a member of the GPI-anchor biosynthesis pathway, as the gene mutated in HPMR. We identified homozygous or compound heterozygous mutations in PIGV in three additional families.
引用
收藏
页码:827 / 829
页数:3
相关论文
共 15 条
[1]   Hypomorphic promoter mutation in PIGM causes inherited glycosylphosphatidylinositol deficiency [J].
Almeida, Antonio M. ;
Murakami, Yoshiko ;
Layton, D. Mark ;
Hillmen, Peter ;
Sellick, Gabrielle S. ;
Maeda, Yusuke ;
Richards, Stephen ;
Patterson, Scott ;
Kotsianidis, Ioannis ;
Mollica, Luigina ;
Crawford, Dorothy H. ;
Baker, Alastair ;
Ferguson, Michael ;
Roberts, Irene ;
Houlston, Richard ;
Kinoshita, Taroh ;
Karadimitris, Anastasios .
NATURE MEDICINE, 2006, 12 (07) :846-851
[2]   Hyperphosphatasia with mental retardation, brachytelephalangy, and a distinct facial gestalt: Delineation of a recognizable syndrome [J].
Horn, Denise ;
Schottmann, Gudrun ;
Meinecke, Peter .
EUROPEAN JOURNAL OF MEDICAL GENETICS, 2010, 53 (02) :85-88
[3]   PIG-V involved in transferring the second mannose in glycosylphosphatidylinositol [J].
Kang, JY ;
Hong, YJ ;
Ashida, H ;
Shishioh, N ;
Murakami, Y ;
Morita, YS ;
Maeda, Y ;
Kinoshita, T .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (10) :9489-9497
[4]   Biosynthesis, remodelling and functions of mammalian GPI-anchored proteins: Recent progress [J].
Kinoshita, Taroh ;
Fujita, Morihisa ;
Maeda, Yusuke .
JOURNAL OF BIOCHEMISTRY, 2008, 144 (03) :287-294
[5]   HYPERPHOSPHATASIA WITH MENTAL-RETARDATION [J].
KRUSE, K ;
HANEFELD, F ;
KOHLSCHUTTER, A ;
ROSSKAMP, R ;
GROSSSELBECK, G .
JOURNAL OF PEDIATRICS, 1988, 112 (03) :436-439
[6]   FAMILIAL HYPERPHOSPHATASIA WITH MENTAL RETARDATION, SEIZURES, AND NEUROLOGIC DEFICITS [J].
MABRY, CC ;
BAUTISTA, A ;
KIRK, RFH ;
DUBILIER, LD ;
BRAUNSTEIN, H ;
KOEPKE, JA .
JOURNAL OF PEDIATRICS, 1970, 77 (01) :74-+
[7]   Severe mental retardation, epilepsy, anal anomalies, and distal phalangeal hypoplasia in siblings [J].
Marcelis, Carlo L. ;
Rieu, Paul ;
Beemer, Frits ;
Brunner, Han G. .
CLINICAL DYSMORPHOLOGY, 2007, 16 (02) :73-76
[8]   Runs of homozygosity in European populations [J].
McQuillan, Ruth ;
Leutenegger, Anne-Louise ;
Abdel-Rahman, Rehab ;
Franklin, Christopher S. ;
Pericic, Marijana ;
Barac-Lauc, Lovorka ;
Smolej-Narancic, Nina ;
Janicijevic, Branka ;
Polasek, Ozren ;
Tenesa, Albert ;
MacLeod, Andrew K. ;
Farrington, Susan M. ;
Rudan, Pavao ;
Hayward, Caroline ;
Vitart, Veronique ;
Rudan, Igor ;
Wild, Sarah H. ;
Dunlop, Malcolm G. ;
Wright, Alan F. ;
Campbell, Harry ;
Wilson, James F. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2008, 83 (03) :359-372
[9]   Exome sequencing identifies the cause of a mendelian disorder [J].
Ng, Sarah B. ;
Buckingham, Kati J. ;
Lee, Choli ;
Bigham, Abigail W. ;
Tabor, Holly K. ;
Dent, Karin M. ;
Huff, Chad D. ;
Shannon, Paul T. ;
Jabs, Ethylin Wang ;
Nickerson, Deborah A. ;
Shendure, Jay ;
Bamshad, Michael J. .
NATURE GENETICS, 2010, 42 (01) :30-U41
[10]   Targeted capture and massively parallel sequencing of 12 human exomes [J].
Ng, Sarah B. ;
Turner, Emily H. ;
Robertson, Peggy D. ;
Flygare, Steven D. ;
Bigham, Abigail W. ;
Lee, Choli ;
Shaffer, Tristan ;
Wong, Michelle ;
Bhattacharjee, Arindam ;
Eichler, Evan E. ;
Bamshad, Michael ;
Nickerson, Deborah A. ;
Shendure, Jay .
NATURE, 2009, 461 (7261) :272-U153