Dynamic simulation of the human red blood cell metabolic network

被引:65
作者
Jamshidi, N [1 ]
Edwards, JS
Fahland, T
Church, GM
Palsson, BO
机构
[1] Univ Calif San Diego, Dept Bioengn, La Jolla, CA 92093 USA
[2] Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USA
[3] Univ Delaware, Dept Chem Engn, Newark, DE 19711 USA
关键词
D O I
10.1093/bioinformatics/17.3.286
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We have developed a Mathematica (R) application package to perform dynamic simulations of the red blood cell (RBC) metabolic network. The package relies on, and integrates, many years of mathematical modeling and biochemical work on red blood cell metabolism. The extensive data regarding the red blood cell metabolic network and the previous kinetic analysis of all the individual components makes the human RBC an ideal 'model' system for mathematical metabolic models. The Mathematica package can be used to understand the dynamics and regulatory characteristics of the red blood cell.
引用
收藏
页码:286 / 287
页数:2
相关论文
共 12 条
[1]  
ATAULLAKHANOV FI, 1981, ACTA BIOL MED GER, V40, P991
[2]   MATHEMATICAL-MODELING OF METABOLIC PATHWAYS AFFECTED BY AN ENZYME DEFICIENCY - A MATHEMATICAL-MODEL OF GLYCOLYSIS IN NORMAL AND PYRUVATE-KINASE-DEFICIENT RED BLOOD-CELLS [J].
HOLZHUTTER, HG ;
JACOBASCH, G ;
BISDORFF, A .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1985, 149 (01) :101-111
[3]   METABOLIC DYNAMICS IN THE HUMAN RED-CELL .1. A COMPREHENSIVE KINETIC-MODEL [J].
JOSHI, A ;
PALSSON, BO .
JOURNAL OF THEORETICAL BIOLOGY, 1989, 141 (04) :515-528
[4]   BIOCHEMICAL MECHANISMS OF GLUCOSE-6-PHOSPHATE-DEHYDROGENASE DEFICIENCY [J].
MORELLI, A ;
BENATTI, U ;
GAETANI, GF ;
DEFLORA, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1978, 75 (04) :1979-1983
[5]   Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations: computer simulation and Metabolic Control analysis [J].
Mulquiney, PJ ;
Kuchel, PW .
BIOCHEMICAL JOURNAL, 1999, 342 :597-604
[6]   MATHEMATICAL-MODEL FOR INFLUENCE OF ANIONIC EFFECTORS ON PHOSPHOFRUCTOKINASE FROM RAT ERYTHROCYTES [J].
OTTO, M ;
HEINRICH, R ;
JACOBASCH, G ;
RAPOPORT, S .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1977, 74 (02) :413-420
[7]  
Roigas H, 1965, Folia Haematol Int Mag Klin Morphol Blutforsch, V83, P383
[8]   APPLICATION OF PROGRESS CURVE ANALYSIS TO INSITU ENZYME-KINETICS USING H-1-NMR SPECTROSCOPY [J].
VANDENBERG, JI ;
KUCHEL, PW ;
KING, GF .
ANALYTICAL BIOCHEMISTRY, 1986, 155 (01) :38-44
[9]  
WERNER A, 1985, BIOMED BIOCHIM ACTA, V44, P185
[10]  
Wolfram S., 1991, MATH SYSTEM DOING MA