Evaluation of restriction enzymes for standardizing pulsed-field gel electrophoresis protocol for rapid subtyping of Vibrio parahaemolyticus

被引:8
作者
Wang, You-Wun [1 ]
Chern, Lih-Ling
Cam, Phung Dac
Chiou, Chien-Shun [1 ,2 ]
机构
[1] Ctr Dis Control, Cent Reg Lab, Ctr Res & Diagnost, Taichung 40855, Taiwan
[2] Chung Shan Med Univ, Inst Med, Taichung 40201, Taiwan
关键词
molecular typing; PulseNet; pulsed-field gel electrophoresis; Vibrio parahaemolyticus;
D O I
10.1016/j.diagmicrobio.2008.01.024
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
We evaluated the cost-effectiveness of the restriction enzymes with rare-cutting sites in the genome of Vibrio parahaemolyticus RIMD 2210633 for pulsed-field gel electrophoresis (PFGE) analysis. The evaluation indicated that PFGE with both NotI and SfiI was discriminatory, but NotI was more cost-effective. Based on the results of this study, we suggest using NotI and SfiI as the 1st and the 2nd restriction enzyme for standardizing the PulseNet PFGE protocol for molecular subtyping and global surveillance of V. parahaemolyticus. (C) 2008 Elsevier Inc. All rights reserved.
引用
收藏
页码:251 / 255
页数:5
相关论文
共 22 条
[1]   Variability of properties of Vibrio parahaemolyticus strains isolated from individual patients [J].
Bhoopong, Phuangthip ;
Palittapongarnpim, Prasit ;
Pomwised, Rattanaruji ;
Kiatkittipong, Arpapak ;
Kamruzzaman, Muhammad ;
Nakaguchi, Yoshitsugu ;
Nishibuchi, Mitsuaki ;
Ishibashi, Masanori ;
Vuddhakul, Varaporn .
JOURNAL OF CLINICAL MICROBIOLOGY, 2007, 45 (05) :1544-1550
[2]   In silico analysis of complete bacterial genomes:: PCR, AFLP-PCR and endonuclease restriction [J].
Bikandi, J ;
San Millán, R ;
Rementeria, A ;
Garaizar, J .
BIOINFORMATICS, 2004, 20 (05) :798-U767
[3]   Usefulness of Inter-IS1 spacer polymorphisms for subtyping of Shigella sonnei isolates [J].
Chiou, Chien-Shun ;
Wei, Hsiao-Lun ;
Wang, You-Wen ;
Liao, Jui-Cheng ;
Li, Chun-Chin .
JOURNAL OF CLINICAL MICROBIOLOGY, 2006, 44 (11) :3928-3933
[4]   Vibrio parahaemolyticus serovar O3:K6 as cause of unusually high incidence of food-borne disease outbreaks in Taiwan from 1996 to 1999 [J].
Chiou, CS ;
Hsu, SY ;
Chiu, SI ;
Wang, TK ;
Chao, CS .
JOURNAL OF CLINICAL MICROBIOLOGY, 2000, 38 (12) :4621-4625
[5]   Emergence and serovar transition of Vibrio parahaemolyticus pandemic strains isolated during a diarrhea outbreak in Vietnam between 1997 and 1999 [J].
Chowdhury, A ;
Ishibashi, M ;
Thiem, VD ;
Tuyet, DTN ;
Van Tung, T ;
Chien, BT ;
von Seidlein, L ;
Canh, DG ;
Clemens, J ;
Trach, DD ;
Nishibuchi, M .
MICROBIOLOGY AND IMMUNOLOGY, 2004, 48 (04) :319-327
[6]   Molecular evidence of clonal Vibrio parahaemolyticus pandemic strains [J].
Chowdhury, NR ;
Chakraborty, S ;
Ramamurthy, T ;
Nishibuchi, M ;
Yamasaki, S ;
Takeda, Y ;
Nair, GB .
EMERGING INFECTIOUS DISEASES, 2000, 6 (06) :631-636
[7]   Development and validation of a PulseNet standardized pulsed-field gel electrophoresis protocol for subtyping of Vibrio cholerae [J].
Cooper, K. L. F. ;
Luey, C. K. Y. ;
Bird, M. ;
Terajima, J. ;
Nair, G. B. ;
Kam, K. M. ;
Arakawa, E. ;
Safa, A. ;
Cheung, D. T. ;
Law, C. P. ;
Watanabe, H. ;
Kubota, K. ;
Swaminathan, B. ;
Ribot, E. M. .
FOODBORNE PATHOGENS AND DISEASE, 2006, 3 (01) :51-58
[8]   PulseNet USA:: A five-year update [J].
Gerner-Smidt, P. ;
Hise, K. ;
Kincaid, J. ;
Hunter, S. ;
Rolando, S. ;
Hyytia-Trees, E. ;
Ribot, E. M. ;
Swaminathan, B. .
FOODBORNE PATHOGENS AND DISEASE, 2006, 3 (01) :9-19
[9]   Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms [J].
Grundmann, H ;
Hori, S ;
Tanner, G .
JOURNAL OF CLINICAL MICROBIOLOGY, 2001, 39 (11) :4190-4192