Contact order revisited: Influence of protein size on the folding rate

被引:307
作者
Ivankov, DN
Garbuzynskiy, SO
Alm, E
Plaxco, KW
Baker, D
Finkelstein, AV [1 ]
机构
[1] Russian Acad Sci, Inst Prot Res, Pushchino 142290, Moscow Region, Russia
[2] Univ Washington, Dept Biochem, Seattle, WA 98195 USA
[3] Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA
[4] Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
关键词
protein folding kinetics; two-state kinetics; multistate kinetics; contact order; protein size; protein topology; rate of folding;
D O I
10.1110/ps.0302503
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Guided by the recent success of empirical model predicting the folding rates of small two-state folding proteins from the relative contact order (CO) of their native structures, by a theoretical model of protein folding that predicts that logarithm of the folding rate decreases with the protein chain length L as L-2/3, and by the finding that the folding rates of multistate folding proteins strongly correlate with their sizes and have very bad correlation with CO, we reexamined the dependence of folding rate on CO and L in attempt to find a structural parameter that determines folding rates for the totality of proteins. We show that the Abs_CO = CO x L, is able to predict rather accurately folding rates for both two-state and multistate folding proteins, as well as short peptides, and that this Abs-CO scales with the protein chain length as L0.70+/-0.07 for the totality of studied single-domain proteins and peptides.
引用
收藏
页码:2057 / 2062
页数:6
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