Insights on biology and evolution from microbial genome sequencing

被引:90
作者
Fraser-Liggett, CM [1 ]
机构
[1] Inst Gen Res, Rockville, MD 20850 USA
关键词
D O I
10.1101/gr.3724205
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
No Field of research has embraced and applied genomic technology more than the field of microbiology. Comparative analysis of nearly 300 microbial species has demonstrated that the microbial genome is a dynamic entity shaped by multiple forces. Microbial genomics has provided a foundation for a broad range of applications, from understanding basic biological processes, host-pathogen interactions, and protein-protein interactions, to discovering DNA variations that can be used in genotyping or forensic analyses, the design of novel antimicrobial compounds and vaccines, and the engineering of microbes for industrial applications. Most recently, metagenomics approaches are allowing LIS to begin to probe complex microbial communities for the first time, and they hold great promise in helping to unravel the relationships between microbial species.
引用
收藏
页码:1603 / 1610
页数:8
相关论文
共 81 条
  • [1] Complete genome sequence of the apicomplexan, Cryptosporidium parvum
    Abrahamsen, MS
    Templeton, TJ
    Enomoto, S
    Abrahante, JE
    Zhu, G
    Lancto, CA
    Deng, MQ
    Liu, C
    Widmer, G
    Tzipori, S
    Buck, GA
    Xu, P
    Bankier, AT
    Dear, PH
    Konfortov, BA
    Spriggs, HF
    Iyer, L
    Anantharaman, V
    Aravind, L
    Kapur, V
    [J]. SCIENCE, 2004, 304 (5669) : 441 - 445
  • [2] Reductive evolution of resident genomes
    Andersson, SGE
    Kurland, CG
    [J]. TRENDS IN MICROBIOLOGY, 1998, 6 (07) : 263 - 268
  • [3] Phylogenetic reconstruction and lateral gene transfer
    Bapteste, E
    Boucher, Y
    Leigh, J
    Doolittle, WF
    [J]. TRENDS IN MICROBIOLOGY, 2004, 12 (09) : 406 - 411
  • [4] Genome rearrangement distances and gene order phylogeny in γ-proteobacteria
    Belda, E
    Moya, A
    Silva, FJ
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2005, 22 (06) : 1456 - 1467
  • [5] Lateral gene transfer and the origins of prokaryotic groups
    Boucher, Y
    Douady, CJ
    Papke, RT
    Walsh, DA
    Boudreau, MER
    Nesbo, CL
    Case, RJ
    Doolittle, WF
    [J]. ANNUAL REVIEW OF GENETICS, 2003, 37 : 283 - 328
  • [6] Mucosal immunisation of African green monkeys (Cercopithecus aethiops) with an attenuated parainfluenza virus expressing the SARS coronavirus spike protein for the prevention of SARS
    Bukreyev, A
    Lamirande, EW
    Buchholz, UJ
    Vogel, LN
    Elkins, WR
    St Claire, M
    Murphy, BR
    Subbarao, K
    Collins, PL
    [J]. LANCET, 2004, 363 (9427) : 2122 - 2127
  • [7] The source of laterally transferred genes in bacterial genomes -: art. no. R57
    Daubin, V
    Lerat, E
    Perrière, G
    [J]. GENOME BIOLOGY, 2003, 4 (09)
  • [8] Phylogenetics and the cohesion of bacterial genomes
    Daubin, V
    Moran, NA
    Ochman, H
    [J]. SCIENCE, 2003, 301 (5634) : 829 - 832
  • [9] Transcriptome analysis of Neisseria meningitidis during infection
    Dietrich, G
    Kurz, S
    Hübner, C
    Aepinus, C
    Theiss, S
    Guckenberger, M
    Panzner, U
    Weber, J
    Frosch, M
    [J]. JOURNAL OF BACTERIOLOGY, 2003, 185 (01) : 155 - 164
  • [10] DOLINSKI K, 2005, GENOME RES