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Amide I vibrational dynamics of N-methylacetamide in polar solvents:: The role of electrostatic interactions
被引:218
作者:
DeCamp, MF
DeFlores, L
McCracken, JM
Tokmakoff, A
[1
]
Kwac, K
Cho, M
机构:
[1] MIT, Dept Chem, Cambridge, MA 02139 USA
[2] MIT, George R Harrison Spect Lab, Cambridge, MA 02139 USA
[3] Korea Univ, Dept Chem, Seoul 136701, South Korea
[4] Korea Univ, Ctr Multidimens Spect, Div Chem & Mol Engn, Seoul 136701, South Korea
关键词:
D O I:
10.1021/jp050257p
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
The vibrational frequency of the amide I transition of peptides is known to be sensitive to the strength of its hydrogen bonding interactions. In an effort to account for interactions with hydrogen bonding solvents in terms of electrostatics, we study the vibrational dynamics of the amide I coordinate of N-methylacetamide in prototypical polar solvents: D2O, CDCl3, and DMSO-d(6). These three solvents have varying hydrogen bonding strengths, and provide three distinct solvent environments for the amide group. The frequency-frequency correlation function, the orientational correlation function, and the vibrational relaxation rate of the amide I vibration in each solvent are retrieved by using three-pulse vibrational photon echoes, two-dimensional infrared spectroscopy, and pump-probe spectroscopy. Direct comparisons are made to molecular dynamics simulations. We find good quantitative agreement between the experimentally retrieved and simulated correlation functions over all time scales when the solute-solvent interactions are determined from the electrostatic potential between the solvent and the atomic sites of the amide group.
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页码:11016 / 11026
页数:11
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