The impact of Lys→Arg surface mutations on the crystallization of the globular domain of RhoGDI

被引:38
作者
Czepas, J
Devedjiev, Y
Krowarsch, D
Derewenda, U
Otlewski, J
Derewenda, ZS [1 ]
机构
[1] Univ Virginia, Dept Mol Physiol & Biol Phys, Charlottesville, VA 22908 USA
[2] Univ Wroclaw, Inst Biochem & Mol Biol, PL-50137 Wroclaw, Poland
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2004年 / 60卷
关键词
D O I
10.1107/S0907444903026271
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The potential of rational surface mutagenesis for enhanced protein crystallization is being probed in an ongoing effort. In previous work, it was hypothesized that residues with high conformational entropy such as Glu and Lys are suitable targets for surface mutagenesis, as they are rarely incorporated in crystal contacts or protein-protein interfaces. Previous experiments using Lys-->Ala, Glu-->Ala and Glu-->Asp mutants confirmed that mutated proteins were more likely to crystallize. In the present paper, the usefulness of Lys-->Arg mutations is studied. Several mutations of the globular domain of human RhoGDI were generated, including the single mutants K105R, K113R, K127R, K138R and K141R, the double mutants K(98,99)R and K(199,200)R and the triple mutants K(98,99,105)R and K(135,138,141)R. It is shown that Lys-->Arg mutants are more likely to crystallize than the wild-type protein, although not as likely as Lys-->Ala mutants. Out of the nine mutants tested, five produced diffracting crystals, including the K(199,200)R double mutant, which crystallized in a new space group and exceeded by similar to1.0 Angstrom the resolution of the diffraction of the wild-type crystal. Major crystal contacts in the new lattice were created by the mutated epitope.
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页码:275 / 280
页数:6
相关论文
共 20 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   In search of new anti-bacterial target genes: A comparative/structural genomics approach [J].
Claverie, JM ;
Monchois, V ;
Audic, S ;
Poirot, O ;
Abergel, C .
COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2002, 5 (07) :511-522
[3]   The protein as a variable in protein crystallization [J].
Dale, GE ;
Oefner, C ;
D'Arcy, A .
JOURNAL OF STRUCTURAL BIOLOGY, 2003, 142 (01) :88-97
[4]  
Dasgupta S, 1997, PROTEINS, V28, P494, DOI 10.1002/(SICI)1097-0134(199708)28:4<494::AID-PROT4>3.0.CO
[5]  
2-A
[6]  
DEREWENDA, 2004, IN PRESS
[7]   Parallel cloning, expression, purification and crystallization of human proteins for structural genomics [J].
Ding, HT ;
Ren, H ;
Chen, Q ;
Fang, G ;
Li, LF ;
Li, R ;
Wang, R ;
Jia, XY ;
Liang, YH ;
Hu, MH ;
Li, Y ;
Luo, JC ;
Gu, XC ;
Su, XD ;
Luo, M ;
Lu, SY .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :2102-2108
[8]   An extensively modified version of MolScript that includes greatly enhanced coloring capabilities [J].
Esnouf, RM .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1997, 15 (02) :132-+
[9]   A modulator of rho family G proteins, rhoGDI, binds these G proteins via an immunoglobulin-like domain and a flexible N-terminal arm [J].
Keep, NH ;
Barnes, M ;
Barsukov, I ;
Badii, R ;
Lian, LY ;
Segal, AW ;
Moody, PCE ;
Roberts, GCK .
STRUCTURE, 1997, 5 (05) :623-633
[10]  
Lo Conte L, 1999, J MOL BIOL, V285, P2177