A Laboratory Information Management System (LIMS) for a high throughput genetic platform aimed at candidate gene mutation screening

被引:22
作者
Voegele, C.
Tavtigian, S. V.
de Silva, D.
Cuber, S.
Thomas, A.
Le Calvez-Kelm, F.
机构
[1] Int Agcy Res Canc, F-69372 Lyon, France
[2] Utah State Univ, Dept Med Informat, Salt Lake City, UT USA
关键词
D O I
10.1093/bioinformatics/btm365
中图分类号
Q5 [生物化学];
学科分类号
071010 [生物化学与分子生物学]; 081704 [应用化学];
摘要
High throughput mutation screening in an automated environment generates large data sets that have to be organized and stored reliably. Complex multistep workflows require strict process management and careful data tracking. We have developed a Laboratory Information Management Systems (LIMS) tailored to high throughput candidate gene mutation scanning and resequencing that respects these requirements. Designed with a client/server architecture, our system is platform independent and based on open- source tools from the database to the web application development strategy. Flexible, expandable and secure, the LIMS, by communicating with most of the laboratory instruments and robots, tracks samples and laboratory information, capturing data at every step of our automated mutation screening workflow. An important feature of our LIMS is that it enables tracking of information through a laboratory workflow where the process at one step is contingent on results from a previous step.
引用
收藏
页码:2504 / 2506
页数:3
相关论文
共 3 条
[1]
A comparison of high-resolution melting analysis with denaturing high-performance liquid chromatography for mutation scanning - Cystic fibrosis transmembrane conductance regulator gene as a model [J].
Chou, LS ;
Lyon, E ;
Wittwer, CT .
AMERICAN JOURNAL OF CLINICAL PATHOLOGY, 2005, 124 (03) :330-338
[2]
Mutation scanning of the RET protooncogene using high-resolution melting analysis [J].
Margraf, RL ;
Mao, R ;
Highsmith, WE ;
Holtegaard, LM ;
Wittwer, CT .
CLINICAL CHEMISTRY, 2006, 52 (01) :138-141
[3]
TAVTIGIAN SV, 1997, ACCOMPLISHMENTS CANC, P189