Transcription Factor AP1 Potentiates Chromatin Accessibility and Glucocorticoid Receptor Binding

被引:356
作者
Biddie, Simon C. [1 ,4 ]
John, Sam [1 ]
Sabo, Pete J. [3 ]
Thurman, Robert E. [3 ]
Johnson, Thomas A. [1 ]
Schiltz, R. Louis [1 ]
Miranda, Tina B. [1 ]
Sung, Myong-Hee [1 ]
Trump, Saskia [5 ]
Lightman, Stafford L. [4 ]
Vinson, Charles [2 ]
Stamatoyannopoulos, John A. [3 ]
Hager, Gordon L. [1 ]
机构
[1] NCI, Lab Receptor Biol & Gene Express, NIH, Bethesda, MD 20892 USA
[2] NCI, Lab Metab, NIH, Bethesda, MD 20892 USA
[3] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA
[4] Univ Bristol, Henry Wellcome Labs Neurosci & Endocrinol, Fac Med & Dent, Bristol BS1 3NY, Avon, England
[5] UFZ Helmholtz Ctr Environm Res, Dept Environm Immunol, D-04318 Leipzig, Germany
基金
美国国家卫生研究院;
关键词
NF-KAPPA-B; DNA-BINDING; IN-VIVO; RETINOIC ACID; C-JUN; PROTEIN; ACTIVATION; GENE; REPRESSION; SEQUENCE;
D O I
10.1016/j.molcel.2011.06.016
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ligand-dependent transcription by the nuclear receptor glucocorticoid receptor (GR) is mediated by interactions with coregulators. The role of these interactions in determining selective binding of GR to regulatory elements remains unclear. Recent findings indicate that a large fraction of genomic GR binding coincides with chromatin that is accessible prior to hormone treatment, suggesting that receptor binding is dictated by proteins that maintain chromatin in an open state. Combining DNasel accessibility and chromatin immunoprecipitation with high-throughput sequencing, we identify the activator protein 1 (AP1) as a major partner for productive GR-chromatin interactions. AP1 is critical for GR-regulated transcription and recruitment to co-occupied regulatory elements, illustrating an extensive AP1-GR interaction network. Importantly, the maintenance of baseline chromatin accessibility facilitates GR recruitment and is dependent on AP1 binding. We propose a model in which the basal occupancy of transcription factors acts to prime chromatin and direct inducible transcription factors to select regions in the genome.
引用
收藏
页码:145 / 155
页数:11
相关论文
共 42 条
  • [1] STEROID-RECEPTOR MEDIATED INHIBITION OF RAT PROLACTIN GENE-EXPRESSION DOES NOT REQUIRE THE RECEPTOR DNA-BINDING DOMAIN
    ADLER, S
    WATERMAN, ML
    XI, H
    ROSENFELD, MG
    [J]. CELL, 1988, 52 (05) : 685 - 695
  • [2] MEME SUITE: tools for motif discovery and searching
    Bailey, Timothy L.
    Boden, Mikael
    Buske, Fabian A.
    Frith, Martin
    Grant, Charles E.
    Clementi, Luca
    Ren, Jingyuan
    Li, Wilfred W.
    Noble, William S.
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 : W202 - W208
  • [3] Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
    Carroll, JS
    Liu, XS
    Brodsky, AS
    Li, W
    Meyer, CA
    Szary, AJ
    Eeckhoute, J
    Shao, WL
    Hestermann, EV
    Geistlinger, TR
    Fox, EA
    Silver, PA
    Brown, M
    [J]. CELL, 2005, 122 (01) : 33 - 43
  • [4] Glucocorticoids repress NF-κB-driven genes by disturbing the interaction of p65 with the basal transcription machinery, irrespective of coactivator levels in the cell
    De Bosscher, K
    Vanden Berghe, W
    Vermeulen, L
    Plaisance, S
    Boone, E
    Haegeman, G
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (08) : 3919 - 3924
  • [5] TRANSCRIPTION FACTOR INTERACTIONS - SELECTORS OF POSITIVE OR NEGATIVE REGULATION FROM A SINGLE DNA ELEMENT
    DIAMOND, MI
    MINER, JN
    YOSHINAGA, SK
    YAMAMOTO, KR
    [J]. SCIENCE, 1990, 249 (4974) : 1266 - 1272
  • [6] Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
    Heinz, Sven
    Benner, Christopher
    Spann, Nathanael
    Bertolino, Eric
    Lin, Yin C.
    Laslo, Peter
    Cheng, Jason X.
    Murre, Cornelis
    Singh, Harinder
    Glass, Christopher K.
    [J]. MOLECULAR CELL, 2010, 38 (04) : 576 - 589
  • [7] OCCUPATION OF THE C-FOS SERUM RESPONSE ELEMENT INVIVO BY A MULTI-PROTEIN COMPLEX IS UNALTERED BY GROWTH-FACTOR INDUCTION
    HERRERA, RE
    SHAW, PE
    NORDHEIM, A
    [J]. NATURE, 1989, 340 (6228) : 68 - 70
  • [8] Hesselberth JR, 2009, NAT METHODS, V6, P283, DOI [10.1038/NMETH.1313, 10.1038/nmeth.1313]
  • [9] Genomic Antagonism between Retinoic Acid and Estrogen Signaling in Breast Cancer
    Hua, Sujun
    Kittler, Ralf
    White, Kevin P.
    [J]. CELL, 2009, 137 (07) : 1259 - 1271
  • [10] FOXA1 is a key determinant of estrogen receptor function and endocrine response
    Hurtado, Antoni
    Holmes, Kelly A.
    Ross-Innes, Caryn S.
    Schmidt, Dominic
    Carroll, Jason S.
    [J]. NATURE GENETICS, 2011, 43 (01) : 27 - U42