The eukaryotic genome as an RNA machine

被引:467
作者
Amaral, Paulo P. [1 ]
Dinger, Marcel E. [1 ]
Mercer, Tim R. [1 ]
Mattick, John S. [1 ]
机构
[1] Univ Queensland, Inst Mol Biosci, St Lucia, Qld 4072, Australia
关键词
D O I
10.1126/science.1155472
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The past few years have revealed that the genomes of all studied eukaryotes are almost entirely transcribed, generating an enormous number of non-protein-coding RNAs (ncRNAs). In parallel, it is increasingly evident that many of these RNAs have regulatory functions. Here, we highlight recent advances that illustrate the diversity of ncRNA control of genome dynamics, cell biology, and developmental programming.
引用
收藏
页码:1787 / 1789
页数:3
相关论文
共 71 条
  • [1] The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
    Aravin, Alexei A.
    Hannon, Gregory J.
    Brennecke, Julius
    [J]. SCIENCE, 2007, 318 (5851) : 761 - 764
  • [2] Intergenic transcription and transinduction of the human beta-globin locus
    Ashe, HL
    Monks, J
    Wijgerde, M
    Fraser, P
    Proudfoot, NJ
    [J]. GENES & DEVELOPMENT, 1997, 11 (19) : 2494 - 2509
  • [3] Telomeric repeat-containing RNA and RNA surveillance factors at mammalian chromosome ends
    Azzalin, Claus M.
    Reichenbach, Patrick
    Khoriauli, Lela
    Giulotto, Elena
    Lingner, Joachim
    [J]. SCIENCE, 2007, 318 (5851) : 798 - 801
  • [4] Mammalian mirtron genes
    Berezikov, Eugene
    Chung, Wei-Jen
    Willis, Jason
    Cuppen, Edwin
    Lai, Eric C.
    [J]. MOLECULAR CELL, 2007, 28 (02) : 328 - 336
  • [5] Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Birney, Ewan
    Stamatoyannopoulos, John A.
    Dutta, Anindya
    Guigo, Roderic
    Gingeras, Thomas R.
    Margulies, Elliott H.
    Weng, Zhiping
    Snyder, Michael
    Dermitzakis, Emmanouil T.
    Stamatoyannopoulos, John A.
    Thurman, Robert E.
    Kuehn, Michael S.
    Taylor, Christopher M.
    Neph, Shane
    Koch, Christoph M.
    Asthana, Saurabh
    Malhotra, Ankit
    Adzhubei, Ivan
    Greenbaum, Jason A.
    Andrews, Robert M.
    Flicek, Paul
    Boyle, Patrick J.
    Cao, Hua
    Carter, Nigel P.
    Clelland, Gayle K.
    Davis, Sean
    Day, Nathan
    Dhami, Pawandeep
    Dillon, Shane C.
    Dorschner, Michael O.
    Fiegler, Heike
    Giresi, Paul G.
    Goldy, Jeff
    Hawrylycz, Michael
    Haydock, Andrew
    Humbert, Richard
    James, Keith D.
    Johnson, Brett E.
    Johnson, Ericka M.
    Frum, Tristan T.
    Rosenzweig, Elizabeth R.
    Karnani, Neerja
    Lee, Kirsten
    Lefebvre, Gregory C.
    Navas, Patrick A.
    Neri, Fidencio
    Parker, Stephen C. J.
    Sabo, Peter J.
    Sandstrom, Richard
    Shafer, Anthony
    [J]. NATURE, 2007, 447 (7146) : 799 - 816
  • [6] Susceptibility to coronary artery disease and diabetes is encoded by distinct, tightly linked SNPs in the ANRIL locus on chromosome 9p
    Broadbent, Helen M.
    Peden, John F.
    Lorkowski, Stefan
    Goel, Anuj
    Ongen, Halit
    Green, Fiona
    Clarke, Robert
    Collins, Rory
    Franzosi, Maria Grazia
    Tognoni, Gianni
    Seedorf, Udo
    Rust, Stephan
    Eriksson, Per
    Hamsten, Anders
    Farrall, Martin
    Watkins, Hugh
    [J]. HUMAN MOLECULAR GENETICS, 2008, 17 (06) : 806 - 814
  • [7] Drosophila PIWI associates with chromatin and interacts directly with HP1a
    Brower-Toland, Brent
    Findley, Seth D.
    Jiang, Ling
    Liu, Li
    Yin, Hang
    Dus, Monica
    Zhou, Pei
    Elgin, Sarah C. R.
    Lin, Haifan
    [J]. GENES & DEVELOPMENT, 2007, 21 (18) : 2300 - 2311
  • [8] Transcription and RNAi in heterochromatic gene silencing
    Buehler, Marc
    Moazed, Danesh
    [J]. NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2007, 14 (11) : 1041 - 1048
  • [9] RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing
    Buehler, Marc
    Haas, Wilhelm
    Gygi, Steven P.
    Moazed, Danesh
    [J]. CELL, 2007, 129 (04) : 707 - 721
  • [10] Ultraconserved regions encoding ncRNAs are, altered in human leukemias and carcinomas
    Calin, George A.
    Liu, Chang-Gong
    Ferracin, Manuela
    Hyslop, Terry
    Spizzo, Riccardo
    Sevignani, Cinzia
    Fabbri, Muller
    Cimmino, Amelia
    Lee, Eun Joo
    Wojcik, Sylwia E.
    Shimizu, Masayoshi
    Tili, Esmerina
    Rossi, Simona
    Taccioli, Cristian
    Pichiorri, Flavia
    Liu, Xiuping
    Zupo, Simona
    Herlea, Vlad
    Gramantieri, Laura
    Lanza, Giovanni
    Alder, Hansjuerg
    Rassenti, Laura
    Volinia, Stefano
    Schmittgen, Thomas D.
    Kipps, Thomas J.
    Negrini, Massimo
    Croce, Carlo M.
    [J]. CANCER CELL, 2007, 12 (03) : 215 - 229