Beyond biogeographic patterns: processes shaping the microbial landscape

被引:1287
作者
Hanson, China A. [1 ]
Fuhrman, Jed A. [2 ]
Horner-Devine, M. Claire [3 ]
Martiny, Jennifer B. H. [1 ]
机构
[1] Univ Calif Irvine, Dept Ecol & Evolutionary Biol, Irvine, CA 92697 USA
[2] Univ So Calif, Dept Biol Sci, Los Angeles, CA 90089 USA
[3] Univ Washington, Sch Aquat & Fishery Sci, Seattle, WA 98195 USA
基金
美国国家科学基金会; 美国海洋和大气管理局;
关键词
COMMUNITY COMPOSITION; GLOBAL PATTERNS; DISTANCE-DECAY; LOCAL FACTORS; GENE FLOW; BACTERIAL COMMUNITIES; THERMOPHILIC BACTERIA; EXPERIMENTAL TESTS; BETA-DIVERSITY; DISPERSAL;
D O I
10.1038/nrmicro2795
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Recently, microbiologists have established the existence of biogeographic patterns among a wide range of microorganisms. The focus of the field is now shifting to identifying the mechanisms that shape these patterns. Here, we propose that four processes - selection, drift, dispersal and mutation - create and maintain microbial biogeographic patterns on inseparable ecological and evolutionary scales. We consider how the interplay of these processes affects one biogeographic pattern, the distance-decay relationship, and review evidence from the published literature for the processes driving this pattern in microorganisms. Given the limitations of inferring processes from biogeographic patterns, we suggest that studies should focus on directly testing the underlying processes.
引用
收藏
页码:497 / 506
页数:10
相关论文
共 114 条
[1]   Microbial diversity and the genetic nature of microbial species [J].
Achtman, Mark ;
Wagner, Michael .
NATURE REVIEWS MICROBIOLOGY, 2008, 6 (06) :431-440
[2]  
[Anonymous], 2005, METACOMMUNITIES SPAT
[3]  
[Anonymous], 1937, GENETICS ORIGIN SPEC
[4]  
[Anonymous], 2007, PRINCIPLES POPULATIO
[5]  
Antonovics J., 1976, Systematic Botany, V1, P233, DOI 10.2307/2418718
[6]   Balance of Neutral and Deterministic Components in the Dynamics of Activated Sludge Floc Assembly [J].
Ayarza, Joaquin M. ;
Erijman, Leonardo .
MICROBIAL ECOLOGY, 2011, 61 (03) :486-495
[7]   Ancient origins determine global biogeography of hot and cold desert cyanobacteria [J].
Bahl, Justin ;
Lau, Maggie C. Y. ;
Smith, Gavin J. D. ;
Vijaykrishna, Dhanasekaran ;
Cary, S. Craig ;
Lacap, Donnabella C. ;
Lee, Charles K. ;
Papke, R. Thane ;
Warren-Rhodes, Kimberley A. ;
Wong, Fiona K. Y. ;
McKay, Christopher P. ;
Pointing, Stephen B. .
NATURE COMMUNICATIONS, 2011, 2
[8]   Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies [J].
Baker, Kate L. ;
Langenheder, Silke ;
Nicol, Graeme W. ;
Ricketts, Dean ;
Killham, Kenneth ;
Campbell, Colin D. ;
Prosser, James I. .
SOIL BIOLOGY & BIOCHEMISTRY, 2009, 41 (11) :2292-2298
[9]   Global phylogenetic community structure and β-diversity patterns in surface bacterioplankton metacommunities [J].
Barberan, Albert ;
Casamayor, Emilio O. .
AQUATIC MICROBIAL ECOLOGY, 2010, 59 (01) :1-10
[10]   Genome evolution and adaptation in a long-term experiment with Escherichia coli [J].
Barrick, Jeffrey E. ;
Yu, Dong Su ;
Yoon, Sung Ho ;
Jeong, Haeyoung ;
Oh, Tae Kwang ;
Schneider, Dominique ;
Lenski, Richard E. ;
Kim, Jihyun F. .
NATURE, 2009, 461 (7268) :1243-U74