Using relaxation dispersion NMR spectroscopy to determine structures of excited, invisible protein states

被引:96
作者
Hansen, D. Flemming [1 ,2 ]
Vallurupalli, Pramodh [1 ,2 ]
Kay, Lewis E. [1 ,2 ]
机构
[1] Univ Toronto, Dept Mol Genet, Toronto, ON M5S 1A8, Canada
[2] Univ Toronto, Dept Biochem & Chem, Toronto, ON M5S 1A8, Canada
基金
加拿大健康研究院;
关键词
D O I
10.1007/s10858-008-9251-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Currently the main focus of structural biology is the determination of static three-dimensional representations of biomolecules that for the most part correspond to low energy (ground state) conformations. However, it is becoming increasingly well recognized that higher energy structures often play important roles in function as well. Because these conformers are populated to only low levels and are often only transiently formed their study is not amenable to many of the tools of structural biology. In this perspective we discuss the role of CPMG-based relaxation dispersion NMR spectroscopy in characterizing these low populated, invisible states. It is shown that robust methods for measuring both backbone chemical shifts and residual anisotropic interactions in the excited state are in place and that these data provide valuable restraints for structural studies of invisible conformers.
引用
收藏
页码:113 / 120
页数:8
相关论文
共 59 条
[1]   NUCLEAR MAGNETIC RESONANCE METHODS FOR DETERMINING CHEMICAL-EXCHANGE RATES [J].
ALLERHAN.A ;
GUTOWSKY, HS ;
JONAS, J ;
MEINZER, RA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1966, 88 (14) :3185-&
[2]   Weak alignment offers new NMR opportunities to study protein structure and dynamics [J].
Bax, A .
PROTEIN SCIENCE, 2003, 12 (01) :1-16
[3]   The dynamic energy landscape of dihydrofolate reductase catalysis [J].
Boehr, David D. ;
McElheny, Dan ;
Dyson, H. Jane ;
Wright, Peter E. .
SCIENCE, 2006, 313 (5793) :1638-1642
[4]   PROTON RELAXATION OF METHYL CYANIDE IN PRESENCE OF NI(II) IONS, AS STUDIED BY SPIN-ECHO TECHNIQUES [J].
CAMPBELL, ID ;
CARVER, JP ;
DWEK, RA ;
NUMMELIN, AJ ;
RICHARDS, RE .
MOLECULAR PHYSICS, 1971, 20 (05) :913-&
[5]   EFFECTS OF DIFFUSION ON FREE PRECESSION IN NUCLEAR MAGNETIC RESONANCE EXPERIMENTS [J].
CARR, HY ;
PURCELL, EM .
PHYSICAL REVIEW, 1954, 94 (03) :630-638
[6]   GENERAL 2-SITE SOLUTION FOR CHEMICAL EXCHANGE PRODUCED DEPENDENCE OF T2 UPON CARR-PURCELL PULSE SEPARATION [J].
CARVER, JP ;
RICHARDS, RE .
JOURNAL OF MAGNETIC RESONANCE, 1972, 6 (01) :89-&
[7]   Protein structure determination from NMR chemical shifts [J].
Cavalli, Andrea ;
Salvatella, Xavier ;
Dobson, Christopher M. ;
Vendruscolo, Michele .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (23) :9615-9620
[8]   ANALYSIS OF THE BACKBONE DYNAMICS OF INTERLEUKIN-1-BETA USING 2-DIMENSIONAL INVERSE DETECTED HETERONUCLEAR N-15-H-1 NMR-SPECTROSCOPY [J].
CLORE, GM ;
DRISCOLL, PC ;
WINGFIELD, PT ;
GRONENBORN, AM .
BIOCHEMISTRY, 1990, 29 (32) :7387-7401
[9]   Protein backbone angle restraints from searching a database for chemical shift and sequence homology [J].
Cornilescu, G ;
Delaglio, F ;
Bax, A .
JOURNAL OF BIOMOLECULAR NMR, 1999, 13 (03) :289-302
[10]   STUDIES OF CHEMICAL EXCHANGE BY NUCLEAR MAGNETIC RELAXATION IN ROTATING FRAME [J].
DEVERELL, C ;
MORGAN, RE ;
STRANGE, JH .
MOLECULAR PHYSICS, 1970, 18 (04) :553-&