Theoretical evaluation of the hydrogen kinetic isotope effect on the first step of the methylmalonyl-CoA mutase reaction

被引:22
作者
Dybala-Defratyka, A
Paneth, P
机构
[1] Tech Univ Lodz, Dept Chem, Inst Appl Radiat Chem, PL-90924 Lodz, Poland
[2] Coll Arts & Econ WSHE, PL-90222 Lodz, Poland
关键词
hydrogen kinetic isotope effect; methylmalonyl-CoA mutase reaction;
D O I
10.1016/S0162-0134(01)00230-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have calculated hydrogen kinetic isotope effects (KIEs) for the first step of the methylmalonyl-CoA mutase reaction, including multidimensional tunneling correction at the zero curvature (ZCT) level, and compared them with the experimental values. Both alternative mechanisms of this step, concerted and stepwise, can be accommodated. It turned out to be essential to include Arg207 hydrogen-bonded to the reactant in the mechanism predicting simultaneous breaking of the Co-C bond of AdoCbl and hydrogen atom transfer. The consequence of the stepwise mechanism is a much larger facilitation of the homolytic dissociation of the carbon-cobalt bond by the enzyme than currently appreciated; our results suggest lowering of the activation energy by about 23 kcal mol(-1). We have also shown that large hydrogen KIEs of tunneling origin do not necessarily break the Swain-Schaad equation. Furthermore, when this equation does not hold, the exponent may be smaller in the presence of tunneling than it is at the semi-classical limit, indicating that nonclassical behavior may be a more common phenomenon than expected. (C) 2001 Elsevier Science BY. All rights reserved.
引用
收藏
页码:681 / 689
页数:9
相关论文
共 77 条
[1]   Quantum mechanical dynamical effects in an enzyme-catalyzed proton transfer reaction [J].
Alhambra, C ;
Gao, JL ;
Corchado, JC ;
Villà, J ;
Truhlar, DG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (10) :2253-2258
[2]   Quantum dynamics of hydride transfer in enzyme catalysis [J].
Alhambra, C ;
Corchado, JC ;
Sánchez, ML ;
Gao, JL ;
Truhlar, DG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (34) :8197-8203
[3]  
Alhambra C, 2000, J COMPUT CHEM, V21, P1192, DOI 10.1002/1096-987X(200010)21:13<1192::AID-JCC8>3.0.CO
[4]  
2-I
[5]   DFT-SQM force field for cobalt corrinoids [J].
Andruniow, T ;
Zgierski, MZ ;
Kozlowski, PM .
CHEMICAL PHYSICS LETTERS, 2000, 331 (5-6) :502-508
[6]   New light on the Co-C bond activation in B12-dependent enzymes from density functional theory [J].
Andruniow, T ;
Zgierski, MZ ;
Kozlowski, PM .
CHEMICAL PHYSICS LETTERS, 2000, 331 (5-6) :509-512
[7]   Density functional theory analysis of stereoelectronic properties of cobalamins [J].
Andruniow, T ;
Zgierski, MZ ;
Kozlowski, PM .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (46) :10921-10927
[8]  
ANDRUNIOW T, 2001, J AM CHEM SOC
[9]   Low-energy pathway for Pauson-Khand reactions:: Synthesis and reactivity of dicobalt hexacarbonyl complexes of chiral ynamines [J].
Balsells, J ;
Vázquez, J ;
Moyano, A ;
Pericàs, MA ;
Riera, A .
JOURNAL OF ORGANIC CHEMISTRY, 2000, 65 (22) :7291-7302
[10]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .1. THE EFFECT OF THE EXCHANGE-ONLY GRADIENT CORRECTION [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1992, 96 (03) :2155-2160